General information for g2455.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tamozhennic.
Parent gene
- The parent gene g2455 is located on chr_3: 18057714..18059264 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2455 | g2455.t6 | isoform | g2455.t6 | 18057714 | 18058505 |
| chr_3 | g2455 | g2455.t6 | exon | g2455.t6.exon1 | 18057714 | 18058061 |
| chr_3 | g2455 | g2455.t6 | cds | g2455.t6.CDS1 | 18057714 | 18058061 |
| chr_3 | g2455 | g2455.t6 | exon | g2455.t6.exon2 | 18058123 | 18058391 |
| chr_3 | g2455 | g2455.t6 | cds | g2455.t6.CDS2 | 18058123 | 18058391 |
| chr_3 | g2455 | g2455.t6 | exon | g2455.t6.exon3 | 18058451 | 18058505 |
| chr_3 | g2455 | g2455.t6 | cds | g2455.t6.CDS3 | 18058451 | 18058505 |
| chr_3 | g2455 | g2455.t6 | TSS | g2455.t6 | 18059264 | 18059264 |
| chr_3 | g2455 | g2455.t6 | TTS | g2455.t6 | NA | NA |
Sequences
>g2455.t6 Gene=g2455 Length=672
ATGACGACTATGTATGGACGAGATCCATTGGAAGAATTATGGAAAGAGATTTTAGATCTT
CATTGGAACTACCTCGAGATGGAAGAGAGCTTAAAGAAAATTGATGAACGAAAAAAGCTG
GAAGGACGATTGAGAGAATATATAAGTATTGTGCCACATGATAGGAAATTTTTCTTACCT
GAAACAGAACATGTTCTTCGCATAAGCATACAACAAATGCGAGATTTTTCAGCTTTCAAA
GGCGCCATCGGATTTGAGTCAATTAGTCAGTATGCAAATAATCTTTTCACAAAGCCTTGG
CGAAAGGAATATAGAGTGATCAAGATGTATTCGGGATTTTATCAGCATGAAATTAGAAAC
AATTTACTCGATGCAGAGAAAATTTTTATCGCAATGGGCTACAAATTAATGCCAAATCAA
ACGCTTGTTCTTGAAGGCCCGATATGTCCAGATCAAGTGACAAATGTAAGTCGTGATGCA
CTCACTGCTTATGTAGAGTGTCAAATAATGAAGCAAGTCAATAGTGAACTGACCTCAATT
GGCCTCGCAACGACGTGGAATGAAATTTTTAATTTCCGCGAATGTCACATTGGTGACTCA
TCTCAGACGATCAAAGGTCTAACACAGATGCTGCAATCACATCACATACACATGCACGGA
GCTATGAGAAAG
>g2455.t6 Gene=g2455 Length=224
MTTMYGRDPLEELWKEILDLHWNYLEMEESLKKIDERKKLEGRLREYISIVPHDRKFFLP
ETEHVLRISIQQMRDFSAFKGAIGFESISQYANNLFTKPWRKEYRVIKMYSGFYQHEIRN
NLLDAEKIFIAMGYKLMPNQTLVLEGPICPDQVTNVSRDALTAYVECQIMKQVNSELTSI
GLATTWNEIFNFRECHIGDSSQTIKGLTQMLQSHHIHMHGAMRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2455.t6 | Gene3D | G3DSA:1.20.58.2190 | - | 7 | 214 | 0e+00 |
| 2 | g2455.t6 | PANTHER | PTHR15326 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC | 7 | 213 | 0e+00 |
| 3 | g2455.t6 | PANTHER | PTHR15326:SF2 | PROTEIN TAMOZHENNIC | 7 | 213 | 0e+00 |
| 1 | g2455.t6 | Pfam | PF09409 | PUB domain | 85 | 145 | 8e-05 |
| 4 | g2455.t6 | SUPERFAMILY | SSF143503 | PUG domain-like | 82 | 153 | 4e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007275 | multicellular organism development | BP |
| GO:0015031 | protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed