General information for g249.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g249 is located on chr_3: 2019145..2022260 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g249 | g249.t1 | isoform | g249.t1 | 2019145 | 2022260 |
| chr_3 | g249 | g249.t1 | exon | g249.t1.exon1 | 2019145 | 2020083 |
| chr_3 | g249 | g249.t1 | cds | g249.t1.CDS1 | 2019145 | 2020083 |
| chr_3 | g249 | g249.t1 | exon | g249.t1.exon2 | 2021424 | 2022260 |
| chr_3 | g249 | g249.t1 | cds | g249.t1.CDS2 | 2021424 | 2022260 |
| chr_3 | g249 | g249.t1 | TSS | g249.t1 | NA | NA |
| chr_3 | g249 | g249.t1 | TTS | g249.t1 | NA | NA |
Sequences
>g249.t1 Gene=g249 Length=1776
ATGGATCATCTCAGGAAAGCTTTCGGTAATCCACAGATTGTTGTAAATTCAGCAAGGAAG
CAAGTACAAGAGTTAAGTCTGCCAAAAAAGCTAACTCAAGCAGCTCTTACTGAAGCGTCA
ACAACAATCAGCGCATATCTTGAAGCCTGCAGACAAGCTAATATTCAATCGCATGATCGC
AGCCTTGCTTGGAAAGTCTATAATCAACTAGGATCTCGTCATGCTGAAGAGTACTACTCA
TTTTTCAAGCTTAATTATCCTCACGAAGCGAGAGAGGAACGATTAGATGTTTTAATTGAG
TTCTTTGATTCCATCAGAGACGTACTGCCAATAGGTACATACTCAAGTTTCCAAGGAAAT
AAGGATACGAATAAACCGAAGAGTTTTCAACTTAATTCTATTTCCAACAATGATCAGAGT
TCACAAGGTCACTCATCGAACGCTAATTCACAGCAACAGCGAGGACCAACTCGCGGATCA
CCCAATGATAAACCGAAACCTGATGCTTACTACATTAAGGATGTTAAAGAATCCAAACAT
CTAGGATACTTTACAGACAAAGTAAAAGATTATCCAAAGAAGTGTCATCTTTGCGGAAAG
AATAACCATTACACGATAGAGTGTAGAAACTATAAAACGAAAACAATAAATGAACGTTTG
AAGCTAATACAAGAGAAACAACTTTGCAGCTCTTGCGTCATCGCCACTGACCATCAAGCT
AGGCAGTGTCAACTGAGGAAAGGTTGTGGTATTAGATCGGGGTTTAAGCATTGTAATGCG
CTACATCACTATAGTTTGCACAATAAAAATAACGCCCAATTTCCAGCTAACACCAACAAA
GCAGAATCCTCAAATTCAAACGGAGCGTCCAGTGCTACCGATACTCTTTCAAATAAATAT
CAAGGATACAGCGTTACTGGAGCTCAAGGAAATAACAAAAGAAATCGTCAACGACTTGAA
CGACGCGCTCGATCAAACGAGCGTCGAGTAAACTTTCGCCCTCAAGTGGATCAAATTCCA
CCACCACGACGCCCCATTTTCGAACGCTTAGGTCCAAACCCACTTGATGATAATCTGGTG
AATATAGTTCAACGCCGTCGCCTCAGTGTACTCAAATTTCCTTCAATTCCTGACGACGTA
AAATTAGTTGACTTCCTGAATGCTCTTGGTCGTTTTATGCGAGGAATCACGGGTGCAACT
CGAGAATATAATTACATCAATAAAACAATTGGTCCTTCAATTTTCGTTTATGTAATTTCA
CCTGAAGAAGTTGATGAAGCTGTCGGACGAGGCTTCCCTTTCGAATTCGCTTCCGGTCAA
CAAGTCGTTCATCCTTTGTTGATGGCTACCACCATCACTTCTGTCAAAATTGAACATATA
CAAAATGAACCTGTTGAACGAATTCCTACTCTGATGATTCGGGAACTCAGTCAAATCACG
TCACGACATGCAATTTCCATCACCTCAGATGCAGCTCAAATCGTAACTGAAGCTGGAGCT
TACGTCACACATGTTCGAGTTCCTGCAAAGGACTTCACACTCAATCGTTTAGCTGGAATA
GCCTTTGTAGGAATCAGTTCTCATCATCAAGCAGACGCACTCAAAAATCATGTACACGAG
AGATGTGCAAAGAGAATTCCGTTTGCATTGAGTGAACAATTTCCCGTGTTAATACCTACA
TCTTTAGCGCAACAACCACAAGATAAAGCCTGGCATCGACGTGCAGCTATAAGAAATATG
TTAATCTACAGAGGAAATCCATTCGAAAGAGTCTGA
>g249.t1 Gene=g249 Length=591
MDHLRKAFGNPQIVVNSARKQVQELSLPKKLTQAALTEASTTISAYLEACRQANIQSHDR
SLAWKVYNQLGSRHAEEYYSFFKLNYPHEAREERLDVLIEFFDSIRDVLPIGTYSSFQGN
KDTNKPKSFQLNSISNNDQSSQGHSSNANSQQQRGPTRGSPNDKPKPDAYYIKDVKESKH
LGYFTDKVKDYPKKCHLCGKNNHYTIECRNYKTKTINERLKLIQEKQLCSSCVIATDHQA
RQCQLRKGCGIRSGFKHCNALHHYSLHNKNNAQFPANTNKAESSNSNGASSATDTLSNKY
QGYSVTGAQGNNKRNRQRLERRARSNERRVNFRPQVDQIPPPRRPIFERLGPNPLDDNLV
NIVQRRRLSVLKFPSIPDDVKLVDFLNALGRFMRGITGATREYNYINKTIGPSIFVYVIS
PEEVDEAVGRGFPFEFASGQQVVHPLLMATTITSVKIEHIQNEPVERIPTLMIRELSQIT
SRHAISITSDAAQIVTEAGAYVTHVRVPAKDFTLNRLAGIAFVGISSHHQADALKNHVHE
RCAKRIPFALSEQFPVLIPTSLAQQPQDKAWHRRAAIRNMLIYRGNPFERV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g249.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 166 | - |
| 3 | g249.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 159 | - |
| 4 | g249.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 330 | - |
| 2 | g249.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 330 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed