General information for g2505.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Modifier of mdg4.
Parent gene
- The parent gene g2505 is located on chr_3: 18328646..18333574 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2505 | g2505.t4 | TTS | g2505.t4 | 18320164 | 18320164 |
| chr_3 | g2505 | g2505.t4 | isoform | g2505.t4 | 18321033 | 18327275 |
| chr_3 | g2505 | g2505.t4 | exon | g2505.t4.exon1 | 18321033 | 18321360 |
| chr_3 | g2505 | g2505.t4 | cds | g2505.t4.CDS1 | 18321192 | 18321360 |
| chr_3 | g2505 | g2505.t4 | exon | g2505.t4.exon2 | 18321428 | 18321665 |
| chr_3 | g2505 | g2505.t4 | cds | g2505.t4.CDS2 | 18321428 | 18321665 |
| chr_3 | g2505 | g2505.t4 | exon | g2505.t4.exon3 | 18325445 | 18326051 |
| chr_3 | g2505 | g2505.t4 | cds | g2505.t4.CDS3 | 18325445 | 18326051 |
| chr_3 | g2505 | g2505.t4 | exon | g2505.t4.exon4 | 18326119 | 18326242 |
| chr_3 | g2505 | g2505.t4 | cds | g2505.t4.CDS4 | 18326119 | 18326242 |
| chr_3 | g2505 | g2505.t4 | exon | g2505.t4.exon5 | 18326377 | 18326529 |
| chr_3 | g2505 | g2505.t4 | cds | g2505.t4.CDS5 | 18326377 | 18326408 |
| chr_3 | g2505 | g2505.t4 | exon | g2505.t4.exon6 | 18327189 | 18327275 |
| chr_3 | g2505 | g2505.t4 | TSS | g2505.t4 | 18327308 | 18327308 |
Sequences
>g2505.t4 Gene=g2505 Length=1537
AAAGAGTATAACGCTCTGTGAAAATATTAATTGAGTGAAAATTACAAGTGCCACGTTAAT
TAAACTACATTAAAATTGTAGCAAAAGAACGAACAAACTAGAAAGGAATATTGTATAAAG
CGTGAAACGTCCCCAAGAAAAATGGCGGACGAGGAACAATTCTCATTGTGTTGGAATAAT
TTCAACACCAACTTATCGGCTGGCTTTCATGAATCGCTATGCCGCGGTGATCTCGTTGAT
TTCTACTGCACTTAAAGACTTGATTCAATTTATGTATTGTGGTGAAGTTAATGTTAAGCA
AGAGGCATTGCCAGCATTTATTAGCACAGCAGAAGCACTTCAAATTAAAGGATTAACAGA
ATCGAACGAAAATGTCGGCACTCAAGTCGGTTCAGTTTCACCAACCAAAGAACAACATGT
CATCACATCCACTCCATTACCTGACCTCGCATCCATTCGTCCACGTGCTAGTGCACGCGT
TGTCACTCGCCCACAAACATTTAAATTAGAATCTGAGGGAAGCAGTGATGAGAAGCATAC
TGTTGCAATAGTACAAACACCTCAGCCAATTAAACGCATTGCACGTCAGTCAATTACCGC
TGTCGCACCAAAACGACAAAAGACTCAAGTTAGCCAAATAGTACAAGAATCCCATCATCC
TGATCCTCTCGATGCACCTGACCATGAAATAGTTTCACCGCAACAACTTAAAGAAACCAC
TGAATTCATTGACTTGCCAATCGAAACTACTAGTACGCTTAACCCAAAAACTGAACCGGA
ATATGTTGAAGACACACAAGAAGTTGAGACTGAACAGGATGACGATAATCAATATGTCGA
AGATGTGACTTATGGCGAAGAAAAGTACGAGGAATCATATTTCACTGAAGGTGACGCGGA
CAAGGCTGGAGTATCTGGATTTAGCGAAACATATGCAACAGAAGGCGATCAATCGGCAAC
GGAAGCACAAGAATATCAATATATTGAGACGGAGGCAATAGATATTCAATATTCATCAAA
ATTATCGAATAAGAAATATGAATATACGGATTATGAGCAACAACAGATCTCATTAGAAGA
AGAGCAATCTGAATTAACTTTCATTACGACTCCTTGGTCGACCAAATGCCTTGCGCATAA
CAATTATCTATATAATTGCCATAGCACGCATGGAAATAAGACTTACTACCGATGTCACAA
TTATTCAAAGAAAGTTAAAGAAGAAAGATGTCGCGCACGATGCTTGGTTTCGAATGGAAA
AATTATTTCATTTACGGGTGGTAAACATAATCATGAACCGCATACAGAAAAAATTGAAAA
AATTTGCAAAAAAGAGATTGAACGTTCTAAGAGTATAAAGAAAGAAAATTCTTTTTAAGC
AAATTGTCAAATGTACATATTAATGTATTTTCCAATAAATTATTGAAAAGCTTATATAGA
AGCTTTTTTTTAAGTATTTTTATTTTAAGATTAAAAATAATGTCTTCTCTTGTTTAATGA
GATCAATAAGCAAAAATAAGTTTTTCTTGATTTCACT
>g2505.t4 Gene=g2505 Length=389
MNRYAAVISLISTALKDLIQFMYCGEVNVKQEALPAFISTAEALQIKGLTESNENVGTQV
GSVSPTKEQHVITSTPLPDLASIRPRASARVVTRPQTFKLESEGSSDEKHTVAIVQTPQP
IKRIARQSITAVAPKRQKTQVSQIVQESHHPDPLDAPDHEIVSPQQLKETTEFIDLPIET
TSTLNPKTEPEYVEDTQEVETEQDDDNQYVEDVTYGEEKYEESYFTEGDADKAGVSGFSE
TYATEGDQSATEAQEYQYIETEAIDIQYSSKLSNKKYEYTDYEQQQISLEEEQSELTFIT
TPWSTKCLAHNNYLYNCHSTHGNKTYYRCHNYSKKVKEERCRARCLVSNGKIISFTGGKH
NHEPHTEKIEKICKKEIERSKSIKKENSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2505.t4 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 78 | 1.2E-6 |
| 8 | g2505.t4 | Gene3D | G3DSA:2.20.25.240 | - | 288 | 377 | 7.7E-20 |
| 3 | g2505.t4 | PANTHER | PTHR23110:SF97 | MODIFIER OF MDG4 | 13 | 130 | 1.3E-56 |
| 5 | g2505.t4 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 13 | 130 | 1.3E-56 |
| 4 | g2505.t4 | PANTHER | PTHR23110:SF97 | MODIFIER OF MDG4 | 144 | 376 | 1.3E-56 |
| 6 | g2505.t4 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 144 | 376 | 1.3E-56 |
| 1 | g2505.t4 | Pfam | PF00651 | BTB/POZ domain | 13 | 55 | 2.6E-4 |
| 2 | g2505.t4 | Pfam | PF04500 | FLYWCH zinc finger domain | 298 | 362 | 2.6E-11 |
| 10 | g2505.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 11 | g2505.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 12 | g2505.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 11 | - |
| 13 | g2505.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 9 | g2505.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 389 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
