General information for g2515.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2-17 kDa.
Parent gene
- The parent gene g2515 is located on chr_3: 18404777..18406308 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2515 | g2515.t29 | TSS | g2515.t29 | 18402860 | 18402860 |
| chr_3 | g2515 | g2515.t29 | isoform | g2515.t29 | 18403488 | 18405234 |
| chr_3 | g2515 | g2515.t29 | exon | g2515.t29.exon1 | 18403488 | 18403546 |
| chr_3 | g2515 | g2515.t29 | cds | g2515.t29.CDS1 | 18403538 | 18403546 |
| chr_3 | g2515 | g2515.t29 | exon | g2515.t29.exon2 | 18404522 | 18404705 |
| chr_3 | g2515 | g2515.t29 | cds | g2515.t29.CDS2 | 18404522 | 18404705 |
| chr_3 | g2515 | g2515.t29 | exon | g2515.t29.exon3 | 18404772 | 18405234 |
| chr_3 | g2515 | g2515.t29 | cds | g2515.t29.CDS3 | 18404772 | 18404911 |
| chr_3 | g2515 | g2515.t29 | TTS | g2515.t29 | 18405229 | 18405229 |
Sequences
>g2515.t29 Gene=g2515 Length=706
TAATTTATTCTCTACCTTTCATTACAGTTTTTCATTGGCAAGCAACAATTATGGGACCTC
CAGACAGTCCGTATCAGGGAGGCGTTTTCTTCTTAACAATACATTTCCCAACAGATTATC
CATTCAAACCACCCAAAGTGGCTTTTACAACTCGCATATATCACCCAAACATCAATAGTA
ATGGGTCGATCTGTCTCGACATTTTAAGATCTCAATGGTCACCTGCACTAACGATTTCAA
AAGTGTTGTTATCAATTTGCTCTCTTCTCTGTGATCCTAATCCGGATGATCCACTAGTAC
CAGAAATCGCTAGAATATATAAAACGGATCGCGAAAAATATAATGAACTGGCCCGTGAGT
GGACTCGAAAGTATGCTATGTGATGCGTTCCAGATGAGAAATTGTACCGTCAAAATTTAA
TTCTTGCTGTATTATAAACAAAAAACACACAGGCTCCACCAAAACAGCGCATCCTTTGAT
TTTTCTGTTCGTTGCTTCAAAACAATTTTTTAATTTCAATTTTCATCTTTTGTCTATCTC
ATCTCTGTCGCCAGTCTTATTAAGAAGGATTGTAAAGAATATTGATGATAATAACCTTTT
TTGTAAAAAAACAAAAAATCAGTTTAGTGCGAAAGTGGGAAAAGCTTCACCTCTATATGA
TATATTTGAAGAAGAACTAAGAGAAATAAAACTAAAAAAAAATGCA
>g2515.t29 Gene=g2515 Length=110
MGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPAL
TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2515.t29 | CDD | cd00195 | UBCc | 1 | 105 | 1.22039E-57 |
| 5 | g2515.t29 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 110 | 7.0E-58 |
| 2 | g2515.t29 | PANTHER | PTHR24068:SF48 | UBIQUITIN-CONJUGATING ENZYME E2 D3 | 1 | 110 | 1.7E-70 |
| 3 | g2515.t29 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | 110 | 1.7E-70 |
| 1 | g2515.t29 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 1 | 104 | 3.8E-44 |
| 7 | g2515.t29 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 37 | 52 | - |
| 9 | g2515.t29 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 1 | 99 | 40.405 |
| 8 | g2515.t29 | SMART | SM00212 | ubc_7 | 1 | 110 | 8.7E-47 |
| 4 | g2515.t29 | SUPERFAMILY | SSF54495 | UBC-like | 2 | 110 | 2.75E-52 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
