Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytoplasmic dynein 2 heavy chain 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g257 g257.t1 isoform g257.t1 2071681 2086268
chr_3 g257 g257.t1 exon g257.t1.exon1 2071681 2071714
chr_3 g257 g257.t1 cds g257.t1.CDS1 2071681 2071714
chr_3 g257 g257.t1 exon g257.t1.exon2 2071777 2072063
chr_3 g257 g257.t1 cds g257.t1.CDS2 2071777 2072063
chr_3 g257 g257.t1 exon g257.t1.exon3 2072715 2074370
chr_3 g257 g257.t1 cds g257.t1.CDS3 2072715 2074370
chr_3 g257 g257.t1 exon g257.t1.exon4 2074526 2075112
chr_3 g257 g257.t1 cds g257.t1.CDS4 2074526 2075112
chr_3 g257 g257.t1 exon g257.t1.exon5 2075170 2075751
chr_3 g257 g257.t1 cds g257.t1.CDS5 2075170 2075751
chr_3 g257 g257.t1 exon g257.t1.exon6 2075883 2077899
chr_3 g257 g257.t1 cds g257.t1.CDS6 2075883 2077899
chr_3 g257 g257.t1 exon g257.t1.exon7 2078174 2078397
chr_3 g257 g257.t1 cds g257.t1.CDS7 2078174 2078397
chr_3 g257 g257.t1 exon g257.t1.exon8 2078454 2079380
chr_3 g257 g257.t1 cds g257.t1.CDS8 2078454 2079380
chr_3 g257 g257.t1 exon g257.t1.exon9 2079437 2079584
chr_3 g257 g257.t1 cds g257.t1.CDS9 2079437 2079584
chr_3 g257 g257.t1 exon g257.t1.exon10 2079645 2081208
chr_3 g257 g257.t1 cds g257.t1.CDS10 2079645 2081208
chr_3 g257 g257.t1 exon g257.t1.exon11 2081572 2084841
chr_3 g257 g257.t1 cds g257.t1.CDS11 2081572 2084841
chr_3 g257 g257.t1 exon g257.t1.exon12 2084899 2085062
chr_3 g257 g257.t1 cds g257.t1.CDS12 2084899 2085062
chr_3 g257 g257.t1 exon g257.t1.exon13 2085120 2085434
chr_3 g257 g257.t1 cds g257.t1.CDS13 2085120 2085434
chr_3 g257 g257.t1 exon g257.t1.exon14 2085498 2086268
chr_3 g257 g257.t1 cds g257.t1.CDS14 2085498 2086268
chr_3 g257 g257.t1 TTS g257.t1 2086320 2086320
chr_3 g257 g257.t1 TSS g257.t1 NA NA

Sequences

>g257.t1 Gene=g257 Length=12546
ATGGACCACGTCAGATTTATTTTAAATACTTCTGCAAACTACTTCAACTTATCGCAATTT
GAAAAATCATTCGATGATTCTTATGTAAGAGACTTCTTGGAAAATGACAGTCAACGTGTC
TTATCAGCTTCACTTAATGACACAAGAAAGTCAATTCAGTTTCAAAATAAAATTCCCAAT
GAATATCAAAATGTTTTGCTCTTTTATAAGACAAGCAAAAGTGGTTCAAATTCAGAGTTG
GGAATGCTAACTTTAGAGGGTGGAATTGTCAAATCGATCTACAATTCTTTATCGTCTATT
TTTGTGCCGAGTGCTATGAATAAAAATGAATGTTCCACTGACTTAATTGCTTTAATTGAG
AACTTACAAACGAATTTGAGTGTGTCGTTAGGCGTTGCGGAAACAGGTATCACGTCAATA
AAAGATGAAATTCATTTTTGGCGACAAAAGGCACAAAATTCAGCAACAAAGTCAGACAAG
GACGCAGCAAAAGCTTTTTCAAATCAATTGACTCATTTAAATGAAACAATTGAAGAATTT
ATGAATTTAAAATCGATGCAAAAATTAAATAATTTAGAAGATTTAATGGACAGAGTTCAA
TACATTTTAGATGAATTATGGCGAATTCCAAATTTTCAATATCCACAAAATCGAATGATT
TCTGTAATTGATGTTTTATCATCAATGATTATTGATTGTTGTATTGATGATTTGAATCAA
CAAGATGACATGTGGAGCACAAGTTCAATGAATTTAAATGAATTAATTTCACAAGTTATG
GACATTATGAACAATTGGATTCAAACTTGTGATTCTTTGACTAGATTATTTTGGACAAAT
TGTGATCAGCATCCATGGTTAGGAAAGCCTTATATTCCAGCATTAATGACAAGATTTAAA
ACAAGAATTGAAGAAATTCTTGACATTAAACAAATTCACAAGCAAATTTCAATTTTAAGC
AGTGAAGATGAAACAATTGATTTAAGATCAAGAGATTATTTTTATAGTTTCAGAGATATC
AACATTTTTGATACTACACCAATTGGTGATAAATACTGGAACATCGCAAAAAATAAATTT
GAGCAATCTTTATCAAATATTGATGAGAAAATTGCAGCAAATATCAAATTTTCAATCCAA
AATGCTCTCAATAATCCACGGCAAGTTATTTATATTTTCTCAAAATATGAAAATATTCTT
AAAAGACAAAAAATTAAAGATGCATTGAGAATTGAATGTGATCATTTACATCAAGCTGTT
TTGGTTTTTGTTAAGCAATTAACCCAAGCTTTAAATGATAAGAAAAATCATCTTGATGAT
GATGATGAAGTTTCACCATTAGTTTGTGAAATTAAATGGCTAAAAATCATTGAATATCAA
GTGCAGCAAGTTGTTGCAATTTGCAACAGCGTTTTACAAGATCGAAATGATTTTGAAGAT
TTAAAGAAGAAACTTGAAGAATTTCAGCAAGAACTTGAACAAAATTTGAAGCAAAATTTC
GATCAATGGTGTGAACAGTCGATGTCATCAGTTGTAAGTGGTGAACTTGTCCTTAAAGAT
AATGAGCCAGTTGTGAAATTTGAAAAAGGCGAACGACAACTTATGACTGTCACTTACAAT
CCAAAACTGCTTGTTTTCTGTCAAGATCTTCGCCATTTGAAAAATTTTGGCTTTCATGCA
ATTCCAAATGATTTAATAAAATATGGAACAATTGGAAGAAAATATGTGAAATATGCAAGA
AATTTACAGCAAATTGCAAACTTTCATAATACAATTGGTAATCGAATTATTCCATGTCAG
CGACCAATCATGTTGAAAAATGCTATGGAATTGTCAAATTTAGTAAAAAGTCAATCAGTT
TCTTGGAATAATGAAGAATCAGTTAAGAAATATATCATGGTATTGCAAGATGCAATAAAT
CAGCTGTCTAAAGATAACAATTTGCTGTCGGGATATCATGAAATTTTTAAGAAATCTATA
ATAAAACTAATGAGTACAGATCTCTTAAAACAATCAAATGTTTGGAAACAAGAATTAAAA
ACTCTTCGTGACTCAATTGCAACTTTAGAGAAGAAAGGCTATACAAATTTACATCTTTTC
AAACTCCACTGGGATTATCAACTTTACAAAGCACTTGAATATCAGTTGATTCTCTTCTTA
GTTGATAGTAAAGAGAAATTGCCTGATATCAATATTGATCTTGTCTTTAGAAATCAACAA
CTTCAATTTCGACCAACACTTGAAGAAATTCGTTATGAATATTATTCACAAATTAAAAAA
TATGTCGAAATGCCACTACATTTTCATGGATTTTCTGATAACAGCAATAAACTTTTTAGT
GTAATGGTTGAAAGAAATCGATCAAGATTTAAATCACTTTATGACAGAGCTGAAAGAAAT
TTCAAGAGACTTTGTGAATTTCGTGATTTATGGTTGCCTTGGGTATCACTTGGTTGCGTC
AATTTAGAAAATCTTTGTGAAGTTCATTTATCAACTTGGGAAGATTGGGACAAAAATTTC
AAATCGTGCAAGAATTTTAGTCAAAAAATTGCAAAAATTCAAAAATCTGAGGAAAGAATT
GACTGTTTTGTCGTAAATGTTGCACCAGTCCGCTCTCACATTGAATTCATAGCAAGAAAT
TTTTGGGAAACTTTATCAGTCAGTTTAAGATCATCAATTCTTCAAGACAATTCAATTTTG
CATGAATATATTACAACAGCACTCAATGTTCTTCAACATATTCCTAATGATGATAATGGA
ATAATTTCTGCAAGCTTCAAGTATGAAAAAATTGTCCAAGATTTACCAAGAATGACAGAA
ATGTTGAAAAGTGTGCAAAACAAAAACACTTGCTTAGCTGGTTGGTGTAAAGAAACAGTC
GGTTCTTTAGATTCTCTTCTTGTTCAATGGGAAAAACTTTTGCCTTTAATTGAAAATCAT
CATATGCTGCTACAAGGTCAACTTGAAGTAATTAAAGAAAATTTATTGGGAAAAATCAAT
AATTTGAATGGCGACGCTGAGAAATTTTTAATTAAATGGGAAGACACTTTGAAAGATTTA
GAAACAAATGCTGACATTGATTTTGAAGTTTTTAAAGAAAGGAAACAACAATGGATGGAA
TTTATTGATCGTAGAGATTTATTGATTGCTGAATGCGAAAAATTCAACGCAACATTCACA
AAAGAGCTCAATGAAAATTTCCAAAAGATTGAAGATGACATAAAGCGACACGGTGAACAA
TGGACAGTTTTTGAAGATTTCTTAGCTGATTATGAAGTGATAGAACAAGAAGAATGGTCA
GTTTATCGTCGCAAGCCTTACATTTTTGCTGATTTTCTTTCAAAATGGGAAAATAAGACA
AACAACATGATAACAGTCCCTGCTATGAGAATAAAGAAGCAAATTGAAAAGTTTAGGAAT
ATTATGCCTACTTTGACAATGTTGCAATCAGATTCATTAAGTGATAAACATTGGGCGAGT
ATTTTTAATATAATTGAACTTAAACCAAAATCATACCATGACATAAAACTCACTGATGTG
CTCAAATATGCACCAATACTTGCTGAAAATTCTTCTGAAATAAAAGTAATCGTGCATCAA
GCCTATTCTGAGCAAATTGTTCGTCAAGCAATAACAGAACTTGAACAATGGGGAGTTGTT
GCTAATTTAAAACTTTTCGCTCATTCAGATAGCAAAAATGAGGAATTGATGCTCATAAAA
GATTTTCAAGAATCGCTCAATAAAATTGGTGACAACCAGTGCTTGCTACAATCAGCAAAA
AATACAATAGCAACAGATTCCTTCATGGACCAAATTGAATTATGGGAAAATAAGCTTAAC
ATCCTCAGTTTCATTCTCAATAGTCTTTGTCAAATTCAGAAAAAATGGATTTATCTTGAA
CCAATTTTCTCTAATGGAACTCTTCGTAATGGTGATACATCATTTAATAGAATTGATAAA
GATTTTCGTTACATTATGCGTGGCATTTCTCACAATCCAAAAGTTGTTTCTCTAGTGAAA
ATCAACAATATTCAAATGATAATTGAATCATTAATCAATCAATTGCAGCATTGTCAGAAT
ACATTGACAACTTACATGACTGGCAAGAGAGATTTATTTCCACGATTTTATTTCTTAAGT
GATGATGATTTGCTGGAAATATTGGGTCAATCAAACAAGGAAGCAATAATTCAAAAGCAC
ATAAACAAACTTTTTCCTGGAATTTATAAGCTTGATTTAATCACTAACGAGAAAAAAATG
ACAAAAGTTAGAAGCATAAAAAGTGCAGAAGGTGACAATATTCAACTTACCAATATCATA
TCAACCTCAGAAGCTGTTGAAAGTTGGCTTACAAAACTCGATGATGAAATCAAAGCAACA
CTCAAACAGCAAATCAAATTTTGTTATCAACGCAGTGACATGGCACTTGAAACAATTGAG
AAATTTCCCATGCAAATTCTCTGTCTTGTAAACTCAATCAACTTCACATCGAAACTGGAA
AAATCAATCACCAGCATGAGTTTATCAGCGACATTAAACTCACTCAAGAATGACATTGCA
AACTTTTCATTGATGCTTCAAGGCACGCAAAATGCGTTGACTCAATTAAAAATTCGCGCT
TTACTTTTTGATTTTGTTCATCATGTCACAACGGTTGAATATCTTATGAAACATAACGTA
ACAAATCTCACTGATTGGCATTGGCTACAGCAAATTAAATTTTATTACAATTCACGCACT
GAATTGATAAGCATTAAAGTTGTCAATGCAGAGTTTGAATATTCGTATGAATTTCTTGGC
AATTATAACAAGCTGGTTTATACTTCACTCACTCACAATTGCTATTTAACATTGACGCAA
GCAATGTACTTAGGTTTAGGAGGAAATCCATTTGGAAGAGCTGGCACAGGCAAGACAGAA
TGTGTGAAATCATTGGGAGCAATGATGGGAAGAATGGTTTTAGTTTTTAATTGTAATGAA
AATATCGACACTTCTGCAATGGCTTTAATTTTAACTGGAATTTCAAGATGTGGAGCATGG
GCTTGTTTTGATGAATTTAATAGATTGCAGGAAGAAACTTTGTCGGCAATAGCAATGCTT
ATTCAACCGCTACAAATTGCATTAAAAGAGAAACAGGAATTTGTTTTTATGCTTGATAAA
AATATCCCATTAAATCGTCACTCATGTGTTTTTGTTACACTCAACCCAGCTGATGAAGAT
TATGGTGGAAGAAATCAATTGCCATCAAATTTACAAGCACTCTTTCGTCCAATTGTCATG
CAACAACCAGAACCGAAAGAAATTGCAAAAGTAATGCTTTTTATTGAAGGATTTAAAAAT
GCTGAAGAGGTTGGAAAGAGAATTGTTGAATTGTTTGATTTATCTAACAAACTTTTATCA
CCACAACGTCATTATGATTGGGGATTACGAGAACTGAAAACTGTCTTAAGTGCTTGTGGC
AAAGCGTTGGCCGCAACTCACAATGCTAATCACATAGAATTTTCAATGAAAGAAGAAATG
GAAATTGTAGTTCAGTCATTGAAACCAAATGTGATGTCAAAACTTACTCTTAATGATTGT
AAACGATTTAACATGTTGCTTGAAGATGTTTTTCCTCACCTAAATGTCATAAGTAATGCA
AATGAAGAATTTAGGAATAAAATTGAAGAAACTTTTGTTATGATGGGACTGACAAAGAAT
CAACGACAAATTGACAAATGTATTGAACTTTATGAGCAGTTGAATAAAAGAATTGGAGTT
GCAGTTTACGGACCATCAAGTTCAGGAAAAAGCACAATTATTTCGGTTCTTAAAACTGTT
TTAACATCAATGCAAAAAACTATTCGTACTTATACAATTTCACCAAAGTCAATGGAAAGA
TCTCAACTGCTTGGAAGACTTGATATCAACACAAGACAATGGCATGATGGTGTTCTAACA
CAAACAGCAATTGCAGTAAATAGTGAACCACAAAATGTAACTTCCTGGATCATTTGTGAT
GGTGATGTTGATCCAGAATGGATTGAAGCTTTAAATTCTGTCTTAGATGATAATAAATTA
CTCACATTACCTTCTGGTTGGCGCATTCAATTTGGAAACAATGTAAATTTTATTTTTGAG
ACTCACGACCTTGCAAACGCTTCACCAGCAACAATTTCTCGAATGGGAATTGTAAAATTT
AGTCCTGAAGATTTGCCAGCGATGTCAATTGTTGAAACTTGGATTTCTAAACTTCAAGAT
CCCAATACAATGAAATTGATGATTGAAAAATATTTTGAAAACGTTTTGAATGAATTTGAA
GGAGTTTCAAAATTATCATCACATTTCCCAAAGATTAGCATTGTCAGAAATGTTCTCAAT
GTTTTGTCATCAATCGATTCTCAAGATGAATTTGTAGTTGAGTTAATTAAAGGATTGAAT
GCAATGATTGAGCCGAAGGATAGAAATAAATTTACTAATTCTATTCTTGATCAATACAGC
ATTTACACAAGCAATCCAAACAACGCAGAATATCTTTATTTCAATAAATTTCGAAATATG
GTCGACACATATCTCTCTGATGATAATTCAAGTATTACCCACAATACACAAACTTATACG
ACATCACTTTTTAAAACTGCATCTGTAAAATCAACTTGTGATTTATTGAGAAACGTTTTG
AAAAATTCAGAGAAACCAGCTTTTATTATTTCTGGACCAAATGGAAATGGAAAAAGTTTG
ATGATCAATTCAATTGTATCTGAATTTTCTGGTTATCAACTTGTCACAATTAATTGCAGT
GCACAATTGAATGCAAATCAAATTCTGCAAATTTTAAAGCAAAATTGTTTGGTAGTTTCT
GGAATTCGAGGCAAAGAATACAAGCCAAAGCAGTCAAGATTGATTTTGTTTATGAAAAAT
ATTGATTTGTGCCCAATTGACTCTTGGAGAACGAGTGAAGTGATTGAACTGTTACTGCAA
ATTATGAATAGAAATGGATTTTATTCAGAAAATTTAGAATGGATTAGCATCACAGGATTG
CAAATTTGTGCAACATTAACTGATGTTACAAAGCAAAATTTATCACCAAGGTTTCTTTCA
AAATGCAACATTTTCTTAACAAGTTATCCAAATGAAAGTGATATGCAAAGCATCATTGTA
AATTTCTTGAGTTTCATTTATCACAAAAATTCTTCAATCAACATGAAAAAGGAAAAACTT
TGTGAAATTATGCTCGAAATTTTCAATGAAATAAAAATAAATTTTACATCAGACATGAGC
AATCATTACAAATTTACACCAAAAATGATTGAGCAATGGATTGTTGGCTTAACAAATTAC
TCAAACGAACAATTTTCTTATGCTTTCTTTTATGAATTGTCAAAAATGTTTGGTGATCGT
TTGATGACAATTGAGCATGAAATGATTTTTAGTGACATTATTAGACATAATTTGAAATAT
TTCAATTGCAAATTTGATACAAATGAAACATTTTTCGTGCAAATTTCAACAAATTCTTCA
CAATTGCAAATGATTGATGCACAAAATTGGAGAGAAATGTTAGAGAAAAATTTGCCAATT
TGTAATTCTGAAATTGCAATCATTGATTTACCAATCACAAATGAGTTAATGAGATCTGTG
GCATCAATGGTTCGTGCTTTAAGTCGAAGTGCTACAAATGTTTGTCTTGCTGGAAAACTT
GGATCAGGAAGATTTGAATCAACAGTTCTTGCCTGCTCTTTGATGAATATCAAAATTTTC
TTTCCACAAGTCACTAAAAATTACACGCAAAATGAATTCATCAATGATCTTCGATTAGTT
ATGCAAACATGTGGAGTTGACAATGAAATTGGAGTTTTTTATGTCGATCAAGTTTGGATA
AATTATTTTCCTGAAATTTTAAAGTTTATTGAAGCAATTTTAGAAGACAGTTTCTTTGCT
AATGAACTACTTTTTGGTGATGATTTAGAAACTGTTGCAAATTCACTTAAAGGAGCAGCT
CAATTAGAAGGTTATCAAGAGAGTTTAGTGTCATTTTTCTTAAACCGTGTGAAAAAGAAT
CTTCACTTTATAATCTCTCTCGAAATTACAACATCATCATTCCAAGAAACTCTTAAAACT
TACAAATCGCTCTACTCAAAAACTGAATTCATTTGGCTACCTGAAATTTCAGTTCATACA
AAACAAATTCTTTGTGAAAGTGTGATAAAGCAATTGAAAAATGACACAAATTTGACAAAT
AATTTTGAAATATCTACGAAATATTTTGAAAATATCATTAATGATTGTGGTGTTTGGATT
GATTCACCAAAACGATCAATTCAACTTATTAAAAGTTATCATTTGATTCACATGCAAACT
GAAAGAAAGAAAATAAATAACAAGACAAAACTTGAGCTTGGAATTCAAAAATTATCAGAT
GCTTACAAATATGTCGCAAGATTAAAAGACGATGCAAAAGAGAAGGAAAAAGCTTTGGCT
GAAAAACGACAACTTGCAAATCAAGCTTTAGAAATGATTTCAACTACAATGAAGAGTGCA
AATGATAGAAAAAGTGACATGATGAAACTTAAATCAAAGACAGAAGAAAATGGTGAAATT
TTGAAACAAAGAAAACTTGAAATTGAACAAGAATTGAGTCTAGTTGAACCACTATTGAAA
GAAGCAAGTGCAGCTGTTGGTTCGATAAAAACTGAAGCATTATCAGAAATTAGATCGCTT
AGAGCACCACCAGAAACTATTCGTGACATTCTTGAAGGAGTTTTGAGACTTATGGGAATT
AAGGACACATCATGGAACAGCATGAAGTCATTTCTGGCAAAGCGTGGTGTCAAAGAAGAT
ATTCGATCACTCAATCCGAGTCTTATCAGTCCAGAAAACTGTGCTCAAGTTGAAAGACTA
ATTGAAAGCAAACCAGAATCTTTTGACTCGAGAAATGCAAAAAGAGCATCCGCTGCAGCT
GCTCCATTAGCTTCATGGGTTCTTGCTATCGTAAAATATTCAAAAGTTGTTCAAAGCATA
AAACCACTCGAAAGAGAGCAGAATGAACTTGAAAGAAATCTTGAACAAACTGAAAATCAA
ATGAAATCGCTTTCATCTGGCATTGATGATGTTAATGTAAAAGTAAAAGAACTTTCTGAG
CAACTAAATGGTTACACCCAAGAAGCAGCAATTTTAGAAATAAAACTTGAAGAAACAAGA
AAAACTTTGCAATCAACAGAAGTGTTGGTTGAAAAATTGAGCTCAGAATATAGTAATTGG
ACAAATGAACTTGAAATGATTAATTCAGAAATAAGAGATCTTGATAAGCAATCAATGTTA
ATTGCACTGTGTCTCACTCACTTTTCTCACATGCTCGAAGAAGAAAGAATGAAATTCATT
ACAAAAATTAGTGAAGATTTGCATATAAAATTTGAGCTTCACAATGTAATCTATTCTGAT
CAAGATAAACTTGTTTGGGAAAGCATGGGATTGTCATCTGATAAACAATCGATTGAGAAT
GCAGCAATAATTTTGAAATATCTTCAACTCCCATTTATAACTTCGCCAATTCCTCTTATT
CTTGATCCGACTGGAAGCGCATCAAAATGGCTCAATGAACTTTTAAAATCAAAATCAAAG
AAATTTGAAATTTTGAACCAAAATGATGATCGTTTCACCTATAATCTTGAGCTTGCTGTA
AGATTTGGTAAAATCTTGATCGTTGATGATGTGACAACACATTTTACAGCTTCACTTTTG
TCTTTGCTTACAATGAGAATTCATTCAAGATTTAATAAGAGAATGTTGCATATTGGAAAT
AAATTAATTGACTTGCATGAAGATTTTCGATTAATTTTGATAACTTCAAATGACATTAAA
CACTTGAGTGGTGAAATTAATGCCAATGTGACAATAATTCCTTTCACTTTGACTTCATCT
GGATTTACTGATCAATTACTTTCAAAATGGATTTCAATAAAACATCCTGATACTGAAAAG
AAACGAGTTGAACTGCTCCAAAATGAAGGAAAAATGATGCAAGAAAAAATTCATTTACAA
GACAAACTTCTTGAAGAACTTTCACATGCTGAAGGTGACATTTTGAAGAATGAAAAGTTG
CTAGCAACATTAAATCAAATTAAAGAAAGTAGTGAAGATATTGAAAAATCATTGAATGAA
AGTCATGACATTCGAGTGAAGCTACTTGAAAATTACAACGAATACCGAGATATTTGTAAA
CAGTCAGCAACATTTTATGTTGGAATTTCAAAAATTTATGAACTCAATCCAAAATCATAT
ACAAAAATATTCCTAGAAGTGCTTGAGAAACAAAAAGAAATTGGAGAACTTTCAGATCCA
TTTGTTGAAATTGTCAAGAAAACTTATTTGATGCTAAATCGATCTATAAGAAAATCTGAA
CAGGCACAACTTGGATTGAATGTTTGCAGATGTGCTTTTAGCAAGAAAATTAAGGATAAT
GAATGGGAGTCGTTTATTTTCAATTTCTCTGATGCTGAGTCAATAATTGATCCAACAATA
CCTAAATGGATTAAGAAAGAATTAATTCCAAAATTATCTAGTTTGAAATCTCAACATTCT
GCTTTGTATCAAAAGTTAAATCTTGAAAATAAATTTGATTGGCAGAAATTTATCGATGCC
ACAGAAAATGTTCAGAAAAATTTCCCAAATATTCAACTAACAGAATTTCAACGACTTTTA
GTCTATCAAATTTTCAGACCTGATCAACTTTTAAATGTCATTAATCAAGCCACTGCAAAT
ATGTTGAGCATAAAACAAGATTTGTTCACTCAATCTGGAATTAAACAATTATTAACAGAA
GTTGAACCAAATGAAGCAATTTTAGTCATTGCTTACAATGCTGATCCTGCGAATGAAATT
AAAGAATTTGCAAAATCAATTAACATGGAGAGAAATTTCATTGAAATTTATGTCGGCAAA
GGACAAGAAAATTCAAATTTGAGCTTAATTTTGAATGGAGCAGAAGAAGGAAAAATAATT
TGTGTGAAAAATGTTCACCTTATGCCACAATTCATGCAAACACTTGATTTGAAATTAAAA
ACTGTCAATATTAATCCACAATTCAAATTAATTTATGTATGTGAAACTGATAAAAATATC
CCAAAGCATCTCACGAATAAATATAAGAAATTATTGTTGGAACCACCAAATGGAATAAAA
CACAAGATTTTCAATCTTTTAGAGCAAAATTTTGGAGTTGTAAAAGAAATCCGTGATTAT
CGTCATATGAAATTGTTTATTGCACTATTTATCCTTCATTCGATATTACAAGAGAGAAGG
TCTTTTATTCCTCAAGGATGGTGCAAATGGTATGAATTTGGTGACTCAGATGTCAAAGCT
GCTATTGACTATATAAAAGCAATTAATGGAAAATCATACAATGTCGACTGGACTGTCTTA
AAAGGACTTATTGAAAAGATCATTTATGGTGGAAGAATTGATAATGATCAAGATTTTGAG
AAATTAATTTGTATGGTCAACGATTATTTCGATACAAAAGTAATGAATGCAAAATGGACA
CCAAAATCTTTTAAAATAATAATTCCAAATGCAAACAATATTGAAGAATATCAAAATGCA
TTGATGAAAATGGAAGCGAATGATTCAAAGCCTGAAATGTTTGGTTTATCATCAACTTCA
TCAGTTTCGAGAAATATTGTCATTTGCAGAAATTTATTAAAAGATTTGAGAAAAATTCAC
TTTAATATTGATGACAGTGAGAATTATGAGAAGAGGATTAAACCACTTATTATTATGTGG
AAGAAATTTATGAATATTACAAACATTGAGCCATTGAGCAAAATTAAAGAAGAGTCCTCA
ACAGATGTAAATCCATGGCGACTTTTTAAAACATCAGAAATTCTTCTTGCAAGCAATTTA
GCAAAGAAAATTTCAGAAACTTTACAGAAATTTACTTCAATTGATTTAAATTCAATTTCT
GACAGTGATAAAAGTATTTTGATGATTCTCAGTGACAATTCTGTGCCTTATGATTGGCGA
AAAATGTGGCAGGGCAGTCCAAAAATGACAACAGAATTCTTAAAATCGGTTTCAGTTAGA
ATTCAAAATGTCATGAAATATCTTAACAATCTCGATGAACCAATTGATGAAATTGATTTC
TCAAAAATTTTCAATGTTGATTCGTTTTTATCAACTGTTAAGCTTATTACATCACGTGAC
ATGAATGTGTCAACAAGTGATTTAATTATGGATTCTTTCACTGATGACACAAAATATGAA
GGCATGCGATATCAACAGAATAAAGTAATTAAAGTTGCACCATTGCAAGTTGATGGTCTT
GGAATTGAAAACAATATGCTTGTCTCATCTGAAGGATTTACTGTCAAGAATATCACTGGC
AATGTCTACATTTATTATAAAGAATTTATTAAAGGAATTCACGATGATGACTCACATGTC
TATTCTGTACCACTTTATTCAACTTATACACGTGAAAAATTGTTGTGCATGATCAAACTT
AACACAAGACTTGAAAGTAATGACATTATTTATTCTGGCACAGCATTGATTGTTCCTAGC
AATTAG

>g257.t1 Gene=g257 Length=4181
MDHVRFILNTSANYFNLSQFEKSFDDSYVRDFLENDSQRVLSASLNDTRKSIQFQNKIPN
EYQNVLLFYKTSKSGSNSELGMLTLEGGIVKSIYNSLSSIFVPSAMNKNECSTDLIALIE
NLQTNLSVSLGVAETGITSIKDEIHFWRQKAQNSATKSDKDAAKAFSNQLTHLNETIEEF
MNLKSMQKLNNLEDLMDRVQYILDELWRIPNFQYPQNRMISVIDVLSSMIIDCCIDDLNQ
QDDMWSTSSMNLNELISQVMDIMNNWIQTCDSLTRLFWTNCDQHPWLGKPYIPALMTRFK
TRIEEILDIKQIHKQISILSSEDETIDLRSRDYFYSFRDINIFDTTPIGDKYWNIAKNKF
EQSLSNIDEKIAANIKFSIQNALNNPRQVIYIFSKYENILKRQKIKDALRIECDHLHQAV
LVFVKQLTQALNDKKNHLDDDDEVSPLVCEIKWLKIIEYQVQQVVAICNSVLQDRNDFED
LKKKLEEFQQELEQNLKQNFDQWCEQSMSSVVSGELVLKDNEPVVKFEKGERQLMTVTYN
PKLLVFCQDLRHLKNFGFHAIPNDLIKYGTIGRKYVKYARNLQQIANFHNTIGNRIIPCQ
RPIMLKNAMELSNLVKSQSVSWNNEESVKKYIMVLQDAINQLSKDNNLLSGYHEIFKKSI
IKLMSTDLLKQSNVWKQELKTLRDSIATLEKKGYTNLHLFKLHWDYQLYKALEYQLILFL
VDSKEKLPDINIDLVFRNQQLQFRPTLEEIRYEYYSQIKKYVEMPLHFHGFSDNSNKLFS
VMVERNRSRFKSLYDRAERNFKRLCEFRDLWLPWVSLGCVNLENLCEVHLSTWEDWDKNF
KSCKNFSQKIAKIQKSEERIDCFVVNVAPVRSHIEFIARNFWETLSVSLRSSILQDNSIL
HEYITTALNVLQHIPNDDNGIISASFKYEKIVQDLPRMTEMLKSVQNKNTCLAGWCKETV
GSLDSLLVQWEKLLPLIENHHMLLQGQLEVIKENLLGKINNLNGDAEKFLIKWEDTLKDL
ETNADIDFEVFKERKQQWMEFIDRRDLLIAECEKFNATFTKELNENFQKIEDDIKRHGEQ
WTVFEDFLADYEVIEQEEWSVYRRKPYIFADFLSKWENKTNNMITVPAMRIKKQIEKFRN
IMPTLTMLQSDSLSDKHWASIFNIIELKPKSYHDIKLTDVLKYAPILAENSSEIKVIVHQ
AYSEQIVRQAITELEQWGVVANLKLFAHSDSKNEELMLIKDFQESLNKIGDNQCLLQSAK
NTIATDSFMDQIELWENKLNILSFILNSLCQIQKKWIYLEPIFSNGTLRNGDTSFNRIDK
DFRYIMRGISHNPKVVSLVKINNIQMIIESLINQLQHCQNTLTTYMTGKRDLFPRFYFLS
DDDLLEILGQSNKEAIIQKHINKLFPGIYKLDLITNEKKMTKVRSIKSAEGDNIQLTNII
STSEAVESWLTKLDDEIKATLKQQIKFCYQRSDMALETIEKFPMQILCLVNSINFTSKLE
KSITSMSLSATLNSLKNDIANFSLMLQGTQNALTQLKIRALLFDFVHHVTTVEYLMKHNV
TNLTDWHWLQQIKFYYNSRTELISIKVVNAEFEYSYEFLGNYNKLVYTSLTHNCYLTLTQ
AMYLGLGGNPFGRAGTGKTECVKSLGAMMGRMVLVFNCNENIDTSAMALILTGISRCGAW
ACFDEFNRLQEETLSAIAMLIQPLQIALKEKQEFVFMLDKNIPLNRHSCVFVTLNPADED
YGGRNQLPSNLQALFRPIVMQQPEPKEIAKVMLFIEGFKNAEEVGKRIVELFDLSNKLLS
PQRHYDWGLRELKTVLSACGKALAATHNANHIEFSMKEEMEIVVQSLKPNVMSKLTLNDC
KRFNMLLEDVFPHLNVISNANEEFRNKIEETFVMMGLTKNQRQIDKCIELYEQLNKRIGV
AVYGPSSSGKSTIISVLKTVLTSMQKTIRTYTISPKSMERSQLLGRLDINTRQWHDGVLT
QTAIAVNSEPQNVTSWIICDGDVDPEWIEALNSVLDDNKLLTLPSGWRIQFGNNVNFIFE
THDLANASPATISRMGIVKFSPEDLPAMSIVETWISKLQDPNTMKLMIEKYFENVLNEFE
GVSKLSSHFPKISIVRNVLNVLSSIDSQDEFVVELIKGLNAMIEPKDRNKFTNSILDQYS
IYTSNPNNAEYLYFNKFRNMVDTYLSDDNSSITHNTQTYTTSLFKTASVKSTCDLLRNVL
KNSEKPAFIISGPNGNGKSLMINSIVSEFSGYQLVTINCSAQLNANQILQILKQNCLVVS
GIRGKEYKPKQSRLILFMKNIDLCPIDSWRTSEVIELLLQIMNRNGFYSENLEWISITGL
QICATLTDVTKQNLSPRFLSKCNIFLTSYPNESDMQSIIVNFLSFIYHKNSSINMKKEKL
CEIMLEIFNEIKINFTSDMSNHYKFTPKMIEQWIVGLTNYSNEQFSYAFFYELSKMFGDR
LMTIEHEMIFSDIIRHNLKYFNCKFDTNETFFVQISTNSSQLQMIDAQNWREMLEKNLPI
CNSEIAIIDLPITNELMRSVASMVRALSRSATNVCLAGKLGSGRFESTVLACSLMNIKIF
FPQVTKNYTQNEFINDLRLVMQTCGVDNEIGVFYVDQVWINYFPEILKFIEAILEDSFFA
NELLFGDDLETVANSLKGAAQLEGYQESLVSFFLNRVKKNLHFIISLEITTSSFQETLKT
YKSLYSKTEFIWLPEISVHTKQILCESVIKQLKNDTNLTNNFEISTKYFENIINDCGVWI
DSPKRSIQLIKSYHLIHMQTERKKINNKTKLELGIQKLSDAYKYVARLKDDAKEKEKALA
EKRQLANQALEMISTTMKSANDRKSDMMKLKSKTEENGEILKQRKLEIEQELSLVEPLLK
EASAAVGSIKTEALSEIRSLRAPPETIRDILEGVLRLMGIKDTSWNSMKSFLAKRGVKED
IRSLNPSLISPENCAQVERLIESKPESFDSRNAKRASAAAAPLASWVLAIVKYSKVVQSI
KPLEREQNELERNLEQTENQMKSLSSGIDDVNVKVKELSEQLNGYTQEAAILEIKLEETR
KTLQSTEVLVEKLSSEYSNWTNELEMINSEIRDLDKQSMLIALCLTHFSHMLEEERMKFI
TKISEDLHIKFELHNVIYSDQDKLVWESMGLSSDKQSIENAAIILKYLQLPFITSPIPLI
LDPTGSASKWLNELLKSKSKKFEILNQNDDRFTYNLELAVRFGKILIVDDVTTHFTASLL
SLLTMRIHSRFNKRMLHIGNKLIDLHEDFRLILITSNDIKHLSGEINANVTIIPFTLTSS
GFTDQLLSKWISIKHPDTEKKRVELLQNEGKMMQEKIHLQDKLLEELSHAEGDILKNEKL
LATLNQIKESSEDIEKSLNESHDIRVKLLENYNEYRDICKQSATFYVGISKIYELNPKSY
TKIFLEVLEKQKEIGELSDPFVEIVKKTYLMLNRSIRKSEQAQLGLNVCRCAFSKKIKDN
EWESFIFNFSDAESIIDPTIPKWIKKELIPKLSSLKSQHSALYQKLNLENKFDWQKFIDA
TENVQKNFPNIQLTEFQRLLVYQIFRPDQLLNVINQATANMLSIKQDLFTQSGIKQLLTE
VEPNEAILVIAYNADPANEIKEFAKSINMERNFIEIYVGKGQENSNLSLILNGAEEGKII
CVKNVHLMPQFMQTLDLKLKTVNINPQFKLIYVCETDKNIPKHLTNKYKKLLLEPPNGIK
HKIFNLLEQNFGVVKEIRDYRHMKLFIALFILHSILQERRSFIPQGWCKWYEFGDSDVKA
AIDYIKAINGKSYNVDWTVLKGLIEKIIYGGRIDNDQDFEKLICMVNDYFDTKVMNAKWT
PKSFKIIIPNANNIEEYQNALMKMEANDSKPEMFGLSSTSSVSRNIVICRNLLKDLRKIH
FNIDDSENYEKRIKPLIIMWKKFMNITNIEPLSKIKEESSTDVNPWRLFKTSEILLASNL
AKKISETLQKFTSIDLNSISDSDKSILMILSDNSVPYDWRKMWQGSPKMTTEFLKSVSVR
IQNVMKYLNNLDEPIDEIDFSKIFNVDSFLSTVKLITSRDMNVSTSDLIMDSFTDDTKYE
GMRYQQNKVIKVAPLQVDGLGIENNMLVSSEGFTVKNITGNVYIYYKEFIKGIHDDDSHV
YSVPLYSTYTREKLLCMIKLNTRLESNDIIYSGTALIVPSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
36 g257.t1 CDD cd00009 AAA 2216 2364 0.00421792
32 g257.t1 Coils Coil Coil 471 498 -
34 g257.t1 Coils Coil Coil 672 692 -
31 g257.t1 Coils Coil Coil 1060 1080 -
29 g257.t1 Coils Coil Coil 1897 1917 -
30 g257.t1 Coils Coil Coil 2805 2832 -
35 g257.t1 Coils Coil Coil 2851 2871 -
33 g257.t1 Coils Coil Coil 3000 3097 -
28 g257.t1 Coils Coil Coil 3357 3377 -
15 g257.t1 Gene3D G3DSA:1.20.140.100 - 1226 1371 2.8E-30
16 g257.t1 Gene3D G3DSA:3.20.180.20 - 1373 1457 1.5E-24
27 g257.t1 Gene3D G3DSA:1.20.58.1120 - 1458 1608 2.9E-25
23 g257.t1 Gene3D G3DSA:3.40.50.300 - 1609 1761 5.3E-54
20 g257.t1 Gene3D G3DSA:1.10.8.710 - 1762 1878 1.3E-30
24 g257.t1 Gene3D G3DSA:3.40.50.300 - 1881 2106 1.3E-70
22 g257.t1 Gene3D G3DSA:3.40.50.300 - 2206 2712 3.5E-90
17 g257.t1 Gene3D G3DSA:1.20.920.30 - 2371 2549 3.5E-90
19 g257.t1 Gene3D G3DSA:1.20.920.20 - 2763 3102 1.5E-71
26 g257.t1 Gene3D G3DSA:3.40.50.11510 - 3138 3309 9.0E-40
18 g257.t1 Gene3D G3DSA:1.20.920.20 - 3310 3391 2.6E-9
21 g257.t1 Gene3D G3DSA:3.40.50.300 - 3592 3711 1.9E-16
25 g257.t1 Gene3D G3DSA:1.10.8.720 - 3714 3877 8.9E-33
10 g257.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 136 4083 0.0
11 g257.t1 PANTHER PTHR10676:SF352 CYTOPLASMIC DYNEIN 2 HEAVY CHAIN 1 136 4083 0.0
5 g257.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 1068 1468 4.0E-84
3 g257.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1594 1931 2.5E-106
7 g257.t1 Pfam PF12775 P-loop containing dynein motor region 2215 2367 2.5E-19
2 g257.t1 Pfam PF12780 P-loop containing dynein motor region D4 2529 2753 2.0E-26
1 g257.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 2790 3119 4.5E-19
4 g257.t1 Pfam PF12781 ATP-binding dynein motor region 3146 3374 1.8E-54
9 g257.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 3607 3706 7.1E-16
8 g257.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 3739 3878 7.3E-30
6 g257.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 3890 4177 1.4E-16
14 g257.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1613 1831 2.17E-18
12 g257.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1905 2068 6.41E-12
13 g257.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2216 2469 6.53E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0030286 dynein complex CC
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values