Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2579 g2579.t3 isoform g2579.t3 18826771 18830841
chr_3 g2579 g2579.t3 exon g2579.t3.exon1 18826771 18827212
chr_3 g2579 g2579.t3 exon g2579.t3.exon2 18827256 18827981
chr_3 g2579 g2579.t3 cds g2579.t3.CDS1 18827979 18827981
chr_3 g2579 g2579.t3 exon g2579.t3.exon3 18830400 18830841
chr_3 g2579 g2579.t3 cds g2579.t3.CDS2 18830400 18830774
chr_3 g2579 g2579.t3 TSS g2579.t3 18831095 18831095
chr_3 g2579 g2579.t3 TTS g2579.t3 NA NA

Sequences

>g2579.t3 Gene=g2579 Length=1610
TGAAAAAAGCGGCAGGGATTTGCTATCACAACGCAGAAGACCATATGATATAAAACGTAC
TATATCAATGAACTCAAATTCCAGTAATAATCGGAATAAAAATGAAATTTCATATGAGGA
AGATGAGGATAATGTTGAGGAACATCCAAAAATTATGTCGCGGGTCGTAAGCAGCAAAGA
TAACAATTCCGCAATTACAAAACGTGAACAAGTCATCGCAATTCAGTCGCGAAAAAATGA
TCTCGAGAGGAATAAAAGGATGTTTGGCTGCTTATTGGGAACACTACAAAAATTTAGAAA
AGAAGAAAATTTTCTTAAATCAAAGGAAGAAAAAAAGGCCAAAATTGAAAGAAAACTTGA
AGAACAAGAGCAACTTGAAAAGATTAAAATTAAAGAAGAACGAGATGCATTAATAGCAAA
TCGAAAGAGACAGCAATTAGAATGAAATATGAGATCGCTTATACCGCACGTATTGTCCTT
AAAAGCATGGCATGCCTTCTCATTTTTTGGAATTCATCATGTTATGAATAAAGAAAAGCG
AACGAATCTTGTCATTGAAATCAATGATTTACCGTTGTGTATTTCTTGTTTAAGATCTCG
TTCAAATATGAAGAAGATGCACATGCATTTGAACAGTCAGTGAAATTTGTATTGATTCCG
CTATTAATGCTTCATCTTAGACACGATTTAAATCCCCTCTTTTGCCGCTCGTATTTCATT
ATTATACTAATAAAAAGAGAGTTTTTGGTCAATTTGAAAATGTATTTGGTAAATACCAAT
TGTTCAATGGTGATTCTTAAACTCTCTTGGCACGTCATAAAATAACGACTCAACCATTTT
CCATATCCGTCAATGGAAGACTTTCTTATTGAACACATTCCCCCTCTCACAGTATTTTAT
TTCCATGAAAATCAATTTATTTTTCGTTCGATATCTCTGCAAACATCCAAAAAAACTTTT
ATGATCCAAATTAAATTTGATTACCACAACGCTATGATGCTGAACAAAACTTCAGTCTCT
GCCTCGACACACTTTTGAATACCAAATCGTTTTTAAATCATGTTAAATTTGTCATCCTAT
CCTATGAAGAAAGAAGAACGCACGGAAAATATTGTTCGAAAAAATGAAGATTTACCGCAA
ACTTGAATTTGTCGTTCTATAAGCACATCCTAACTCCTTTCTTTCTAATAAAATATTTGT
TTAAAAGGTTTAAAGAATATTACGCTACAATACCAATGTTCATGGTTTATGGAAAGTTGC
CAATATTTTTAAAAAGTATTCGCATTATGGAAAAGGTGGGAGATGTAAAAACCTAATCTT
ATTCTGCAATTATAAAATGAAAAGTTAAAGGAAAAAAGTATTTCTTACAATACCGTAGTG
ATTGTACAAAAATTCATATCAAATTTTCTCTATGTATCAAATATAATTGAAAGAGTCTCA
CTAAAAGTAAAGAAAAATCGCAATGCTCATATTGAAATTTTGAAAATTACCACAATAATT
CTCGCATCAAATGGAAAATGGCACATTTTATCAAAAAATATGGAAAAGTTAAGTGCCGCA
CTGTCTCTCTTGTGGTCTTTTACACTATGATAGTAGTTCCTCTCATTTGA

>g2579.t3 Gene=g2579 Length=125
MNSNSSNNRNKNEISYEEDEDNVEEHPKIMSRVVSSKDNNSAITKREQVIAIQSRKNDLE
RNKRMFGCLLGTLQKFRKEENFLKSKEEKKAKIERKLEEQEQLEKIKIKEERDALIANRK
RQQLE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g2579.t3 Coils Coil Coil 83 113 -
3 g2579.t3 MobiDBLite mobidb-lite consensus disorder prediction 1 26 -
4 g2579.t3 MobiDBLite mobidb-lite consensus disorder prediction 12 26 -
2 g2579.t3 PANTHER PTHR12707 PINN 6 125 6.4E-17
1 g2579.t3 Pfam PF04696 pinin/SDK/memA/ protein conserved region 60 125 5.3E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed