Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2579 g2579.t8 TTS g2579.t8 18829776 18829776
chr_3 g2579 g2579.t8 isoform g2579.t8 18830043 18830991
chr_3 g2579 g2579.t8 exon g2579.t8.exon1 18830043 18830841
chr_3 g2579 g2579.t8 cds g2579.t8.CDS1 18830043 18830841
chr_3 g2579 g2579.t8 exon g2579.t8.exon2 18830900 18830991
chr_3 g2579 g2579.t8 cds g2579.t8.CDS2 18830900 18830991
chr_3 g2579 g2579.t8 TSS g2579.t8 18831095 18831095

Sequences

>g2579.t8 Gene=g2579 Length=891
ATGGCTACAATAAGTGAACTTAATAGATCAACAGAGGAGAAACTTGATTTAGCGCGGGAA
AAGCTAAAAGATATTAATGAGAGACTTGGGAGTGAAAAAAGCGGCAGGGATTTGCTATCA
CAACGCAGAAGACCATATGATATAAAACGTACTATATCAATGAACTCAAATTCCAGTAAT
AATCGGAATAAAAATGAAATTTCATATGAGGAAGATGAGGATAATGTTGAGGAACATCCA
AAAATTATGTCGCGGGTCGTAAGCAGCAAAGATAACAATTCCGCAATTACAAAACGTGAA
CAAGTCATCGCAATTCAGTCGCGAAAAAATGATCTCGAGAGGAATAAAAGGATGTTTGGC
TGCTTATTGGGAACACTACAAAAATTTAGAAAAGAAGAAAATTTTCTTAAATCAAAGGAA
GAAAAAAAGGCCAAAATTGAAAGAAAACTTGAAGAACAAGAGCAACTTGAAAAGATTAAA
ATTAAAGAAGAACGAGATGCATTAATAGCAAATCGAAAGAGACAGCAATTAGAAGTGAAA
ATTCTCGAGACAAAAATGATTAAAATAAAAGATTTAGCCGTTTATGAAGACAGCTATAAG
CATTTAAGTAATTATGTTAAGACTGCAACCAAACCATCAATTTTTTGGTTGCCCAAATTA
ATGACACCAAAAGTCTCAATGCTGCAAAACAAAACTAGCACTGAAATAAAAGATATGATT
GAAGAGCGCAGAAAGCAAGTGGATGCAGATATAAAGGACATTGAAAATCAAATTGATAAA
GAGTGTGAATCAAATGACGATTACAACGATAAGAAATCCGCCAATAATCATAACAATAAT
TCTATATTAGAAAGTGAAAATGGTAGAGAACGGAAAGAGAATAATGAAAAA

>g2579.t8 Gene=g2579 Length=297
MATISELNRSTEEKLDLAREKLKDINERLGSEKSGRDLLSQRRRPYDIKRTISMNSNSSN
NRNKNEISYEEDEDNVEEHPKIMSRVVSSKDNNSAITKREQVIAIQSRKNDLERNKRMFG
CLLGTLQKFRKEENFLKSKEEKKAKIERKLEEQEQLEKIKIKEERDALIANRKRQQLEVK
ILETKMIKIKDLAVYEDSYKHLSNYVKTATKPSIFWLPKLMTPKVSMLQNKTSTEIKDMI
EERRKQVDADIKDIENQIDKECESNDDYNDKKSANNHNNNSILESENGRERKENNEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2579.t8 Coils Coil Coil 1 28 -
9 g2579.t8 Coils Coil Coil 136 185 -
8 g2579.t8 Coils Coil Coil 237 271 -
3 g2579.t8 MobiDBLite mobidb-lite consensus disorder prediction 24 49 -
4 g2579.t8 MobiDBLite mobidb-lite consensus disorder prediction 24 77 -
7 g2579.t8 MobiDBLite mobidb-lite consensus disorder prediction 50 64 -
5 g2579.t8 MobiDBLite mobidb-lite consensus disorder prediction 256 297 -
6 g2579.t8 MobiDBLite mobidb-lite consensus disorder prediction 256 273 -
2 g2579.t8 PANTHER PTHR12707 PINN 55 287 1.7E-32
1 g2579.t8 Pfam PF04696 pinin/SDK/memA/ protein conserved region 113 230 1.3E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed