Gene loci information

Transcript annotation

  • This transcript has been annotated as Ran-binding protein 16.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2587 g2587.t1 TTS g2587.t1 18917098 18917098
chr_3 g2587 g2587.t1 isoform g2587.t1 18917304 18921395
chr_3 g2587 g2587.t1 exon g2587.t1.exon1 18917304 18917394
chr_3 g2587 g2587.t1 cds g2587.t1.CDS1 18917304 18917394
chr_3 g2587 g2587.t1 exon g2587.t1.exon2 18917459 18917495
chr_3 g2587 g2587.t1 cds g2587.t1.CDS2 18917459 18917495
chr_3 g2587 g2587.t1 exon g2587.t1.exon3 18917555 18917637
chr_3 g2587 g2587.t1 cds g2587.t1.CDS3 18917555 18917637
chr_3 g2587 g2587.t1 exon g2587.t1.exon4 18917700 18917907
chr_3 g2587 g2587.t1 cds g2587.t1.CDS4 18917700 18917907
chr_3 g2587 g2587.t1 exon g2587.t1.exon5 18917969 18918037
chr_3 g2587 g2587.t1 cds g2587.t1.CDS5 18917969 18918037
chr_3 g2587 g2587.t1 exon g2587.t1.exon6 18918100 18918238
chr_3 g2587 g2587.t1 cds g2587.t1.CDS6 18918100 18918238
chr_3 g2587 g2587.t1 exon g2587.t1.exon7 18918298 18918863
chr_3 g2587 g2587.t1 cds g2587.t1.CDS7 18918298 18918863
chr_3 g2587 g2587.t1 exon g2587.t1.exon8 18918917 18919061
chr_3 g2587 g2587.t1 cds g2587.t1.CDS8 18918917 18919061
chr_3 g2587 g2587.t1 exon g2587.t1.exon9 18919122 18920412
chr_3 g2587 g2587.t1 cds g2587.t1.CDS9 18919122 18920412
chr_3 g2587 g2587.t1 exon g2587.t1.exon10 18920475 18920867
chr_3 g2587 g2587.t1 cds g2587.t1.CDS10 18920475 18920867
chr_3 g2587 g2587.t1 exon g2587.t1.exon11 18920934 18921175
chr_3 g2587 g2587.t1 cds g2587.t1.CDS11 18920934 18921175
chr_3 g2587 g2587.t1 exon g2587.t1.exon12 18921393 18921395
chr_3 g2587 g2587.t1 cds g2587.t1.CDS12 18921393 18921395
chr_3 g2587 g2587.t1 TSS g2587.t1 18921413 18921413

Sequences

>g2587.t1 Gene=g2587 Length=3267
ATGGAAGTTCAACAATTGGAGCTGTTTTGCAAGCAATTCTATGAATGCACGGATCCTCTG
ATTAGAACGAAGGCTGAAAAAATCTTATTTGAGTTTTTAGAGGATCCTGATGCACTTTCA
AAATGTCAATTACTTTTGGATCGCGGAGATAGTCCATACTCGCAGCTTCTGGCATCAACT
ACACTTACAAAACTCATCTCAAGAAATGTACAGGGATTAAGTCTTCAGCAAAGAGTAGAC
ATTCGAAATTATATTCTCAACTACTTAGCAACGCGATCATTACAAAGTTTTGTTACTCAA
GCTTTAATAGCGCTACTGGCAAAGATTACAAAGTATGGATGGTTTGATAACTATAAAGAT
GAGATGATATTTCGTAAAATCGATCAAGATGTAAAAGAGTTTCTCAAAGGAAGCGTAGAG
CATTGTATGATTGGAGTTAAAATCCTAACACAGCTCGTTAGTGAAATGAATCAAATCGCC
GAGATGGATGTGAATTTGTCATTTACCCGACATCGAAAAATTGCTTGCTCATTCCGTGAC
ACACAGCTTTTCGACATCTTCCTTCTTTCATGTGAGCTTTTAGCGCGTGCTCGTGACAAT
AGCAATAGTTTAAATCTAATAGACGAAGCTCAACAAGGATTAATTATGGATCTTTTGCAA
CTTGCTAAAAATTGCTTAAGTTTTGATTTCATTGGAACATCTGCCGATGAATCAACTGAT
GATATGACAACAGTACAAGTTCCAACAAATTGGCGAAGTGCATTGCTTGAACTGGATTCT
TTAAAACTCTTTTTCGATCTCTATCAAATTTTACCGCCACGCATTTCAAGTTTAGCGCTC
ACTTGTCTTGTTCAAATAACATCTATTCGCAGGTCGATTTTTAGTAACAATGAGCGTATT
AAATTTCTCAATTGTCTTGTGGCAGGCGCAGTGGAAATTCTAAAGACATCACATGGTTTG
AGTGATCCAAATAATTATCATGAATTTTGTCGTTTACTTGCACGATTAAAATCAAATTAT
CAGCTTGGAGAGCTTGTCATTGTTGACAATTATGCTGAAGCAATTCAATTGATTGCAAAG
TTTACAGTACAATCGCTTCAAATGTGGCAATTTGCTCCTAACAGTGTCCATTATTTACTT
TCATTATGGCAAAGAATGGTTACTTCAGTTCCTTATGTAAAAGCACCTGAGCCGCATTAT
CTTAACACCTACACTCCTGAAGTTGTAAAAGCATACATAACTTCACGATTGGATGCAGTT
ACCCCAATCGTTCGAGATAGCTTAGATGATCCACTTGATGATTTAGGAATGGTAGTACAG
CAACTCGAACAATTATCTACAATTGAACGAAATGAATATGAAAAGACATGTGCTTTAATA
TTTCAATTGTTTGATCAAACGGCAGCAAAATACCAAGAGATTCTTTCAATGCCCTCACCA
AATAATATTGAGTTACAAATTGTTAATAATCAACTGACTTGGCTCGTGTATATTATCGGA
AGTTGTATTGGTGGACGAATTTGTTCGACTGCAACCGAAGAACATGATAGTCTCGATGGG
GATCTTATAATTCGAGTTTTACAACTTATGAGCATTACTGATTCACGTTTGCCACAAGGT
GGATTCGAAAAAATGGAAATAGCATTTATGAATTTTCTTGAAATGGTCCGCAAAATTTAC
ATCAATGAACATACGCAAAAATTAAAAGTTTACAAGCGTTTGTCTGAAGTGCTTGGTGTT
GGTGATGAATCGATGATGTTACTTGGAATGATAAGTCGTAAAATCATTACAAATTTAAAA
TTTTGGGGAAATTCAGAGCTTATTATTCGCAAGACTTTGAATCTACTCAATGATTTAACA
CTTACCTATAGTCTCATTCGAAGACTCATTAAACTGGATGAAATTCAATTTATGCTCAGT
AATCATACTAGTGAATACTTTTCATTTTTGGGAAGCGGAAATATGACAAATTCAAGATGT
CGTAGCATCTTTTATACTTGTTTAGGTCGTCTTTTGATTTTAGATTTGAATGAGGATATT
GCAAGCTTTGAAACATTTATGATGCCATTGACAAATGCATTTGATTCAATTGGGCAAGTA
ATGATGAATAGTATGAATAATAGTATTGATCCCGGTGAACCTGTAAAAAATGCATTAATT
GGTCTTGCTCGTGATATACGAGGTTTGGCATATAGCTTCAATCAAAAAGCTCCATACATG
ATGTTCTTTGACTGGATATATCCAACATATTCTCCGATTTTGATAAGAGCTGTAGAAATA
TGGGCTCACGATCCTACTGTAACAACACCTGTTTTAAAGTTCTTCGGTGAGCTTGTGCAA
AATCGTTCACAACGTTTAGTGTTTGATGTCTCTAGTCCGAATGGTTATTTATTGTTTCGT
GAAACTTCCAAATTAATATGTTGTTATGGAAATCGTATTTTAAACATAGATATTCCAAAG
GAACAAATTTATCAAATGAGATTTAAGGGAATATCTGTATGCTTCTTGATGCTCAAAGCT
ATTTTATGTGGAAATTATGTTAACCTAGGTGTGTTTAAATTGTATGGTGATTCAGCATTC
GATTCCGTCATGACTATTACTGCGAAGCTTATTCTTTCCATTCCTCATAAAGATCTTTTG
GAATATCCTAAACTTAGCACTTCATACTATATTTTACTAGAATGTTTAGCTCAGGATCAT
ATTAAATTTTTGTCCACATTGGAGCCCACAGTTTTTCTATACATTCTAGAAAGTATTTCA
GAAGGATTGAATGCGTTAGATTTGATGATTATTTCTGGTTGTTGTGTGACATTAGATAAC
ATACTTTCATATATATTCAAGCAGAAAACACAAGCAACATTCCCAACAAAAAAACTTCGT
CAAGTATTGGAGCCAGAGACAAATATGTTTTTGGAAGTAACAGAAAGACATCCAGAAATA
CTCCAAAGGATTTTATCCACGTTGTTAAACGTTGTGATCTTTGAGGATTGTAAGAACCAA
TGGTCAATGTCTCGACCACTCTTCGTCTTAATTTTGCTATATGAAGATTATTTCAGACAA
TTGCGTGATAATATTATCAGATCGCAGCCTCTTGACAAGCAGCAACAAATGACTCGATTA
TTTGAGATGCTCATGGAAGGAGTTGAGCGAAATCTACTCGTTAAGAGTCGTGACAGATTT
ACTCAAAATCTCAGCGTATTCAGACGCGAAATTAATGATTCGATGAAAACAGCAAGTATC
AACATGAATGACATGATAGTTTCATAG

>g2587.t1 Gene=g2587 Length=1088
MEVQQLELFCKQFYECTDPLIRTKAEKILFEFLEDPDALSKCQLLLDRGDSPYSQLLAST
TLTKLISRNVQGLSLQQRVDIRNYILNYLATRSLQSFVTQALIALLAKITKYGWFDNYKD
EMIFRKIDQDVKEFLKGSVEHCMIGVKILTQLVSEMNQIAEMDVNLSFTRHRKIACSFRD
TQLFDIFLLSCELLARARDNSNSLNLIDEAQQGLIMDLLQLAKNCLSFDFIGTSADESTD
DMTTVQVPTNWRSALLELDSLKLFFDLYQILPPRISSLALTCLVQITSIRRSIFSNNERI
KFLNCLVAGAVEILKTSHGLSDPNNYHEFCRLLARLKSNYQLGELVIVDNYAEAIQLIAK
FTVQSLQMWQFAPNSVHYLLSLWQRMVTSVPYVKAPEPHYLNTYTPEVVKAYITSRLDAV
TPIVRDSLDDPLDDLGMVVQQLEQLSTIERNEYEKTCALIFQLFDQTAAKYQEILSMPSP
NNIELQIVNNQLTWLVYIIGSCIGGRICSTATEEHDSLDGDLIIRVLQLMSITDSRLPQG
GFEKMEIAFMNFLEMVRKIYINEHTQKLKVYKRLSEVLGVGDESMMLLGMISRKIITNLK
FWGNSELIIRKTLNLLNDLTLTYSLIRRLIKLDEIQFMLSNHTSEYFSFLGSGNMTNSRC
RSIFYTCLGRLLILDLNEDIASFETFMMPLTNAFDSIGQVMMNSMNNSIDPGEPVKNALI
GLARDIRGLAYSFNQKAPYMMFFDWIYPTYSPILIRAVEIWAHDPTVTTPVLKFFGELVQ
NRSQRLVFDVSSPNGYLLFRETSKLICCYGNRILNIDIPKEQIYQMRFKGISVCFLMLKA
ILCGNYVNLGVFKLYGDSAFDSVMTITAKLILSIPHKDLLEYPKLSTSYYILLECLAQDH
IKFLSTLEPTVFLYILESISEGLNALDLMIISGCCVTLDNILSYIFKQKTQATFPTKKLR
QVLEPETNMFLEVTERHPEILQRILSTLLNVVIFEDCKNQWSMSRPLFVLILLYEDYFRQ
LRDNIIRSQPLDKQQQMTRLFEMLMEGVERNLLVKSRDRFTQNLSVFRREINDSMKTASI
NMNDMIVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g2587.t1 Gene3D G3DSA:1.25.10.10 - 1 529 0.0000000
7 g2587.t1 Gene3D G3DSA:1.25.10.10 - 815 1088 0.0000000
2 g2587.t1 PANTHER PTHR12596:SF11 EXPORTIN-7 4 1081 0.0000000
3 g2587.t1 PANTHER PTHR12596 EXPORTIN 4,7-RELATED 4 1081 0.0000000
1 g2587.t1 Pfam PF03810 Importin-beta N-terminal domain 25 90 0.0000000
8 g2587.t1 ProSiteProfiles PS50166 Importin-beta N-terminal domain profile. 25 91 10.3910000
5 g2587.t1 SMART SM00913 IBN_N_2 25 91 0.0000001
4 g2587.t1 SUPERFAMILY SSF48371 ARM repeat 1 945 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031267 small GTPase binding MF
GO:0006886 intracellular protein transport BP
GO:0051169 nuclear transport BP
GO:0005049 nuclear export signal receptor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values