General information for g2587.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ran-binding protein 16.
Parent gene
- The parent gene g2587 is located on chr_3: 18919735..18928552 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2587 | g2587.t2 | isoform | g2587.t2 | 18919502 | 18921395 |
| chr_3 | g2587 | g2587.t2 | exon | g2587.t2.exon1 | 18919502 | 18919735 |
| chr_3 | g2587 | g2587.t2 | cds | g2587.t2.CDS1 | 18919503 | 18919735 |
| chr_3 | g2587 | g2587.t2 | exon | g2587.t2.exon2 | 18920521 | 18920867 |
| chr_3 | g2587 | g2587.t2 | cds | g2587.t2.CDS2 | 18920521 | 18920867 |
| chr_3 | g2587 | g2587.t2 | exon | g2587.t2.exon3 | 18920934 | 18921175 |
| chr_3 | g2587 | g2587.t2 | cds | g2587.t2.CDS3 | 18920934 | 18921175 |
| chr_3 | g2587 | g2587.t2 | exon | g2587.t2.exon4 | 18921393 | 18921395 |
| chr_3 | g2587 | g2587.t2 | cds | g2587.t2.CDS4 | 18921393 | 18921395 |
| chr_3 | g2587 | g2587.t2 | TSS | g2587.t2 | 18921413 | 18921413 |
| chr_3 | g2587 | g2587.t2 | TTS | g2587.t2 | NA | NA |
Sequences
>g2587.t2 Gene=g2587 Length=826
ATGGAAGTTCAACAATTGGAGCTGTTTTGCAAGCAATTCTATGAATGCACGGATCCTCTG
ATTAGAACGAAGGCTGAAAAAATCTTATTTGAGTTTTTAGAGGATCCTGATGCACTTTCA
AAATGTCAATTACTTTTGGATCGCGGAGATAGTCCATACTCGCAGCTTCTGGCATCAACT
ACACTTACAAAACTCATCTCAAGAAATGTACAGGGATTAAGTCTTCAGCAAAGAGTAGAC
ATTCGAAATTATATTCTCAACTACTTAGCAACGCGATCATTACAAAGTTTTGTTACTCAA
GCTTTAATAGCGCTACTGGCAAAGATTACAAAGTATGGATGGTTTGATAACTATAAAGAT
GAGATGATATTTCGTAAAATCGATCAAGATGTAAAAGAGTTTCTCAAAGGAAGCGTAGAG
CATTGTATGATTGGAGTTAAAATCCTAACACAGCTCGTTAGTGAAATGAATCAAATCGCC
GAGATGGATGTGAATTTGTCATTTACCCGACATCGAAAAATTGCTTGCTCATTCCGTGAC
ACACAGCTTTTCGACATCTTCCTTCTTTCATGTGAGCTTTTAGCGCGTGCTCTACAGCAA
CTCGAACAATTATCTACAATTGAACGAAATGAATATGAAAAGACATGTGCTTTAATATTT
CAATTGTTTGATCAAACGGCAGCAAAATACCAAGAGATTCTTTCAATGCCCTCACCAAAT
AATATTGAGTTACAAATTGTTAATAATCAACTGACTTGGCTCGTGTATATTATCGGAAGT
TGTATTGGTGGACGAATTTGTTCGACTGCAACCGAAGAACATGATA
>g2587.t2 Gene=g2587 Length=275
MEVQQLELFCKQFYECTDPLIRTKAEKILFEFLEDPDALSKCQLLLDRGDSPYSQLLAST
TLTKLISRNVQGLSLQQRVDIRNYILNYLATRSLQSFVTQALIALLAKITKYGWFDNYKD
EMIFRKIDQDVKEFLKGSVEHCMIGVKILTQLVSEMNQIAEMDVNLSFTRHRKIACSFRD
TQLFDIFLLSCELLARALQQLEQLSTIERNEYEKTCALIFQLFDQTAAKYQEILSMPSPN
NIELQIVNNQLTWLVYIIGSCIGGRICSTATEEHD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2587.t2 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 253 | 0.0000000 |
| 3 | g2587.t2 | PANTHER | PTHR12596:SF11 | EXPORTIN-7 | 4 | 195 | 0.0000000 |
| 5 | g2587.t2 | PANTHER | PTHR12596 | EXPORTIN 4,7-RELATED | 4 | 195 | 0.0000000 |
| 2 | g2587.t2 | PANTHER | PTHR12596:SF11 | EXPORTIN-7 | 198 | 275 | 0.0000000 |
| 4 | g2587.t2 | PANTHER | PTHR12596 | EXPORTIN 4,7-RELATED | 198 | 275 | 0.0000000 |
| 1 | g2587.t2 | Pfam | PF03810 | Importin-beta N-terminal domain | 25 | 90 | 0.0000000 |
| 9 | g2587.t2 | ProSiteProfiles | PS50166 | Importin-beta N-terminal domain profile. | 25 | 91 | 10.3910000 |
| 7 | g2587.t2 | SMART | SM00913 | IBN_N_2 | 25 | 91 | 0.0000001 |
| 6 | g2587.t2 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 242 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0006886 | intracellular protein transport | BP |
| GO:0051169 | nuclear transport | BP |
| GO:0005049 | nuclear export signal receptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
