General information for g2590.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative CDP-diacylglycerol–inositol 3-phosphatidyltransferase.
Parent gene
- The parent gene g2590 is located on chr_3: 18930716..18933406 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2590 | g2590.t6 | TSS | g2590.t6 | 18929852 | 18929852 |
| chr_3 | g2590 | g2590.t6 | isoform | g2590.t6 | 18929960 | 18930888 |
| chr_3 | g2590 | g2590.t6 | exon | g2590.t6.exon1 | 18929960 | 18930011 |
| chr_3 | g2590 | g2590.t6 | exon | g2590.t6.exon2 | 18930086 | 18930220 |
| chr_3 | g2590 | g2590.t6 | exon | g2590.t6.exon3 | 18930319 | 18930644 |
| chr_3 | g2590 | g2590.t6 | cds | g2590.t6.CDS1 | 18930344 | 18930644 |
| chr_3 | g2590 | g2590.t6 | exon | g2590.t6.exon4 | 18930716 | 18930888 |
| chr_3 | g2590 | g2590.t6 | cds | g2590.t6.CDS2 | 18930716 | 18930888 |
| chr_3 | g2590 | g2590.t6 | TTS | g2590.t6 | 18931567 | 18931567 |
Sequences
>g2590.t6 Gene=g2590 Length=686
ATGTCTCTTATTGAAACAAATAATGTTTATCTTTTCATTCCAAATATTATTGGATATACC
AGAATTGTTTTGGCTATAATATCTTTTTATTTTATGCCAACTAATCATATTATTTCGAGT
TATTGCTACATTGCAAGCGTTCTCGCCGATGCTTTAGATGGACACGCAGCTAGAAAGTTT
AATCAATTATGATAGCTACAAAATTTGGAGCAATGTTGGATCAATTGACTGATCGTTGCG
GAACTATGGGTCTATTAGTTACTTTGAGTTACTTCTATCCGAAATACATGTTTTGGTTTC
AACTGTCAATGGCCATTGATGTTTCTTGTCATTGGTTCTATCTTCATACTACAATTTTGC
AAGGAAAAACAAGTCATAAATTTATTGACATGAATGAGAATCCAATAATGCATATTTATT
ACACAAATCGTACTGTATTAGGCTTCATGTGTCTCTTTAACGAACTTTTCTATGCGGCTC
TATATTTGCTCTATTTTACACCTGGTCCTCTATTCTTGGGTGTTTCATCGTTCAAATTAC
TTGCCATTATTTCTGCACCAGTTGCTATTGTCAAGACATTAATCTCTGTCATACATGGAA
TTGTTGCAAGTGTCAACATTACATCAATCGATGCAAAAGAACGAGAAGATGCGAAAAAGA
AAGATCTAGGCAAGAAAAGTGAATAA
>g2590.t6 Gene=g2590 Length=157
MLDQLTDRCGTMGLLVTLSYFYPKYMFWFQLSMAIDVSCHWFYLHTTILQGKTSHKFIDM
NENPIMHIYYTNRTVLGFMCLFNELFYAALYLLYFTPGPLFLGVSSFKLLAIISAPVAIV
KTLISVIHGIVASVNITSIDAKEREDAKKKDLGKKSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g2590.t6 | PANTHER | PTHR15362 | PHOSPHATIDYLINOSITOL SYNTHASE | 1 | 145 | 7.0E-35 |
| 2 | g2590.t6 | PANTHER | PTHR15362:SF4 | CDP-DIACYLGLYCEROL–INOSITOL 3-PHOSPHATIDYLTRANSFERASE | 1 | 145 | 7.0E-35 |
| 9 | g2590.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 24 | - |
| 12 | g2590.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 25 | 44 | - |
| 6 | g2590.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 45 | 74 | - |
| 10 | g2590.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 75 | 94 | - |
| 8 | g2590.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 95 | 99 | - |
| 11 | g2590.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 100 | 120 | - |
| 7 | g2590.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 121 | 157 | - |
| 5 | g2590.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 25 | 44 | - |
| 4 | g2590.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 75 | 97 | - |
| 3 | g2590.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 112 | 134 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed