General information for g2592.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2592 is located on chr_3: 18940030..18941074 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2592 | g2592.t1 | TSS | g2592.t1 | 18933939 | 18933939 |
| chr_3 | g2592 | g2592.t1 | isoform | g2592.t1 | 18934213 | 18940030 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon1 | 18934213 | 18934365 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS1 | 18934213 | 18934365 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon2 | 18935420 | 18935518 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS2 | 18935420 | 18935518 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon3 | 18935672 | 18936103 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS3 | 18935672 | 18936103 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon4 | 18936173 | 18936658 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS4 | 18936173 | 18936658 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon5 | 18936728 | 18939839 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS5 | 18936728 | 18939839 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon6 | 18939911 | 18939949 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS6 | 18939911 | 18939949 |
| chr_3 | g2592 | g2592.t1 | exon | g2592.t1.exon7 | 18940014 | 18940030 |
| chr_3 | g2592 | g2592.t1 | cds | g2592.t1.CDS7 | 18940014 | 18940030 |
| chr_3 | g2592 | g2592.t1 | TTS | g2592.t1 | NA | NA |
Sequences
>g2592.t1 Gene=g2592 Length=4338
ATGGCTTCTAGTGAAAATAATGAGAATAACTCACTAATAAGCAGTTATAATGACAAGTCA
ATAAGTCGAAGTCATTTGATTGAGCATGAAGAAATAAATAAAAGTGATCAAATGGCATCA
TCAAAAAAATTATCGGACTCCAACGATGAAGAGATTGCTAACTTGAATGATAGTGATTTA
AAAAATTTGCTCGATGAAGCGATGAATTACAAGAATCCACATGACATTGTCAATAAAAGT
GAAACTTTTAAACGCTTACTTCAAAATGTAACTGAGGAGGATGAACAACGTAAAAGGAAA
TTTGAGAGCGATTCTCTGCGTTGGAAAGCACAATCAAATTCACTTCAGAATCTTCTTGAC
GACTCGCATTATCATTTGCCAAGTCACCCTCAAATCTCAAGCAAAAAGCATCAACAAAGA
CGAAAGAATTCTACTTCAGTTTCGACACGCCGTTTAGAAGGTGGAAGTTTACCCGTCGAC
ATGCATCATTCTTCAGTCGTACAATCGACATCCGATCAACCATTTTTATCAGAACTGAAA
AACAATAAGAAACGTAAAGAAAAACAGCAGCAGCAACAATTACAGCAACAGCAGCAAGCA
AAAGATACTGTGATTGATATGGATATGGAGACTGACGATAGAAATAAAAACTTTGTCAAA
TGCCTAGACTCATCGTCAAAAGATACATCATCACACTCTGATGCCCCGATGATAGAAATG
AAATATTTACAAAATCGTTCAAGTATCAATGATATAGATATAGAACGAGAATCGGTTTCT
TCCAAATTTACAATAGCAAATAACACACCAAATACAATCACATCTATGGCATCAATTGGT
AGTCCTATACCGAGCATTCATTCTTCAAAAAGTTCTAGTAATGCAATTACAAGTAGTGTC
GATTCAGTCATTCATCTTCCAACTTTTATCGAAAAACCTAAAGCATATCAACAGGCCCAA
ATTGCGAATACGATTTATGCCCCAGCATCTACTATCAATCATAGCAATAATATTGTTCTC
ACAGGTGGTGATTCAAATTTGGGAGCTTCGAGTTCATCTGGAAATTATAAGCTTTTAAAT
GAGCAACATCTACAATTGCCAAGTGGTCCAGCAATTAACAGTGTTTTAGATCCAAAATAT
GCAAAGTATAAAACAGGAGGAGGACAAAATCGTGATGACGTCAGTTCAATGAATCAAACG
TCTACATCTTCATCATCAATATTACCAGCGAGTCATTCATCATCAAACAATACTGCATCT
AAAGAGTCAAAAAACAATAAGAAACGTACTGCAAAATCGGAAAGAAATGTTAAAAATGTT
GATGTAAAGTCAATCGAAGGATATAGAGGTGACGATGATGTCGAGAAACTCCTCGACTAT
ATTGAAGGCCAAAATCAAGAGAATAAAAATCAAAAAAATCATCCAAAGAATGGCATAGTT
TCAAATACAAATGAGCAAAAATTATTAAGTGCTGAAGAAAAAAAGAAAAAATTAGCAAAG
AATAAGGAAAAAGTTAATAAGTTGAAAAAGAGCAATTCAATGGACGAGCTTTGTTCTACT
AATCGTCAAAAAGAGACACAAGCAGCTGAAGCAGAAGCTGCTGCTGAGTCTGCTGCAACT
GCCAATAAAACCATCTATGATGTTACATTACGTTCAAAGAGTAGCAATTTGACCAGTGGT
GCCAAAAAAGAAAAATCATCATCAGAAAAAATACAATCGAAACGAAATGAACGACGATCA
TGGGGAACTGAAGGTCTCTGGCCTGATACGTTATCTGCATCCACTTCGAGTTGTTTACAA
ACAACAAAGGATAATCATCAAGATGAGCAACTGTTACAGCAACATGAGATCAACGAAACT
TCGAGTTCAAGTAGTTCTAGCGGTGTTCAACTAGATTTTACAGACACTGTAAATTTGACA
AATTTCGAATCAATCAACGCATTAAATGAGACCGATAAATTCCAAGTTGTCTCTAAAAAG
CGAAAAGTGAAGAGAAAATCAAATGAAGCTCCCGAAGTGACTAGTAGTAAACATAACAAC
TTTCATATGCCTGCATTACGTCGTGATGGAAATAATCTTCGTTCCGGGACCAAATATACA
AGTAACGAAAGTAGTCGCAATGATTCAAATATCAAGAGTAATAACAGTAAGAATTCTAAA
CCAATGAGTCAAGATGCCAAACAAATGAATGCAAATAAAAACCGTCGAAAATCTACATCA
TCAATGCCATCAGATGGCGAATACGGTGAGTATTCGGACGGAGGTGACTCAGTGCAATCT
TTGCCAATTGAAAACACAAAGTCACTTTTATCAACGTCAATATCAACTGCGCCCAATACA
AGTGCCGAAAATTCAGGAAAAAGTAAGAAACTTTCTTCATCGAACCCCATACAAATATCG
CCTTCACTACCACAACAACCACCACAGCAACAGAAACCGACAACTTTTTCTTATGCTGAC
ATTGCAAAGACAAACACAAATCGAAATAATAACAATGTCATAGCGGCATCAACCGAAAAG
TGGCCTTCTATTTCATCATCCTCTTCATCCCACCAAAATAATAACAGTAACGCTATTGAT
CCATTTGCAATTTCTAATTTTGATGCCATCAATAATAATAATAATAATAGTAATAGTAGT
AGTCAAAACGTAAACAATGCCGCCACTGTTGTATCAATCAATAATAATCAGAAGCAACAG
CAATTACATTATAAATCGACACCAACAACAATAATTAACACGAGTATGATGTCATCGTTC
CCTAACCTAGTCGAAAGTAATAATAATAGGAATAAGCAGTTAAGTAATAGTCCGTTGGAA
ATTCAACAAACGGCTTCTTCAAATGGCGATGCCCCACAGACTGATAATAAATTATCTTTT
AATAATGGAAACTTTGAGAGAGGAATGTTAGTGACAGCAGGAGGATCTTTCGATAATAAT
AATAATAGTAATACTATTACTAGTAATTCTAGTAATACAGACGATCGGAACAACAATAAT
AGTCAAAAAATATCATATTCTCAGTCACTTTTAGAGAATTATACTGAGATTGATTCAAAT
GGAAATAATTCAAAGCTTGAAGCTAATTTAACTAATACTGTTACTATCTCACAATCATCA
AAAAATATTTTGACAAAATCAAAGAGTGTAGATCACAATAATTTATCTTCAATTGAACAT
TATCCAGCGCTTGAAAAGACTAAACAAACACTCAGTGATGTGCTCTCAAAACCAATTGAG
ACTTTATCGAATAAAACCAAAATAAAGCAACAGCATCAACAACTTACAACTAATGCTGTA
AAAGAGGATAATATCAATAATAGTCCGTTAGTGAGCATTAATAATGTCAATATCAACAGT
ATCAATCCAACATCTGCTGTCATTATGTCTAGCGGAATAACTACAAATGCTACAATTAAT
AAACGTGCTAAAAAAGATAAATTAGCATTAAAAAAGAGCACTTCGACAGTTTCCACATCT
ACAGCAATCATGAATATGCAACAGCAACATAATCAATTTTCCACACAAAATGCTGTTAAC
CATCATCAACATCGCCCTGCTGTTATCATTTTAAATGATGATAATGAAAAATCAAATGAC
TTTGAATTAGGAATAACATTTGGATTCGACATTAACGAGCATCTACTCTTTGGACACCAA
AATGGAGATGCTGATCATCCTAGTGTAGAAATGAATATTAATAATAATAACAGTAATTGT
GATATTATGAATACTAATTTATCAAGTAATAATATTAATATTAATAATTTAACTAATCAA
TCGTGTGGATTCGAAATGTATGAGAACTTTGTTTCGCCTCAATCTGGTATCGTCATAATT
GATCATTCGCAACAATTGATTCATCAGCCCGCAATAATGCAATCATCATCAACCCAAATC
AATACTTCTACTATCATCGTTTCTACATGTACTAATCAAAATAAAGATTGTGTGAATACA
GCAACAGCAGCGACAAACACAATTCTAGATTCGTCAAACGATTTAGGATACTTATCTTCG
TCAATGCAAACAAATTCGACGACACCACCTGCCAATAATCAAAAAGTTGCTAATGAAATA
TTGCCGCTACAAATACAGCAAATGCAGCAACAACAAAGTGATAATAATCAAATTGATAAA
CAGCAAACACAAAACATTAAGGACATCAAGCAACATACGAAACTCGAAGAACTTAAAATG
CTCACGCTGCCACGTTTTATTACTCCTGAACCATCTGTAAAAAACTTTAATTATGATGAA
CTTGTCACTTTTGTTAGTGAAGAATGGACCAAAGTTATGAATAATGGAGTGATTTTTAAT
GGGCTTCAGATGATTTAA
>g2592.t1 Gene=g2592 Length=1445
MASSENNENNSLISSYNDKSISRSHLIEHEEINKSDQMASSKKLSDSNDEEIANLNDSDL
KNLLDEAMNYKNPHDIVNKSETFKRLLQNVTEEDEQRKRKFESDSLRWKAQSNSLQNLLD
DSHYHLPSHPQISSKKHQQRRKNSTSVSTRRLEGGSLPVDMHHSSVVQSTSDQPFLSELK
NNKKRKEKQQQQQLQQQQQAKDTVIDMDMETDDRNKNFVKCLDSSSKDTSSHSDAPMIEM
KYLQNRSSINDIDIERESVSSKFTIANNTPNTITSMASIGSPIPSIHSSKSSSNAITSSV
DSVIHLPTFIEKPKAYQQAQIANTIYAPASTINHSNNIVLTGGDSNLGASSSSGNYKLLN
EQHLQLPSGPAINSVLDPKYAKYKTGGGQNRDDVSSMNQTSTSSSSILPASHSSSNNTAS
KESKNNKKRTAKSERNVKNVDVKSIEGYRGDDDVEKLLDYIEGQNQENKNQKNHPKNGIV
SNTNEQKLLSAEEKKKKLAKNKEKVNKLKKSNSMDELCSTNRQKETQAAEAEAAAESAAT
ANKTIYDVTLRSKSSNLTSGAKKEKSSSEKIQSKRNERRSWGTEGLWPDTLSASTSSCLQ
TTKDNHQDEQLLQQHEINETSSSSSSSGVQLDFTDTVNLTNFESINALNETDKFQVVSKK
RKVKRKSNEAPEVTSSKHNNFHMPALRRDGNNLRSGTKYTSNESSRNDSNIKSNNSKNSK
PMSQDAKQMNANKNRRKSTSSMPSDGEYGEYSDGGDSVQSLPIENTKSLLSTSISTAPNT
SAENSGKSKKLSSSNPIQISPSLPQQPPQQQKPTTFSYADIAKTNTNRNNNNVIAASTEK
WPSISSSSSSHQNNNSNAIDPFAISNFDAINNNNNNSNSSSQNVNNAATVVSINNNQKQQ
QLHYKSTPTTIINTSMMSSFPNLVESNNNRNKQLSNSPLEIQQTASSNGDAPQTDNKLSF
NNGNFERGMLVTAGGSFDNNNNSNTITSNSSNTDDRNNNNSQKISYSQSLLENYTEIDSN
GNNSKLEANLTNTVTISQSSKNILTKSKSVDHNNLSSIEHYPALEKTKQTLSDVLSKPIE
TLSNKTKIKQQHQQLTTNAVKEDNINNSPLVSINNVNINSINPTSAVIMSSGITTNATIN
KRAKKDKLALKKSTSTVSTSTAIMNMQQQHNQFSTQNAVNHHQHRPAVIILNDDNEKSND
FELGITFGFDINEHLLFGHQNGDADHPSVEMNINNNNSNCDIMNTNLSSNNININNLTNQ
SCGFEMYENFVSPQSGIVIIDHSQQLIHQPAIMQSSSTQINTSTIIVSTCTNQNKDCVNT
ATAATNTILDSSNDLGYLSSSMQTNSTTPPANNQKVANEILPLQIQQMQQQQSDNNQIDK
QQTQNIKDIKQHTKLEELKMLTLPRFITPEPSVKNFNYDELVTFVSEEWTKVMNNGVIFN
GLQMI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g2592.t1 | Coils | Coil | Coil | 176 | 201 | - |
| 17 | g2592.t1 | Coils | Coil | Coil | 488 | 511 | - |
| 18 | g2592.t1 | Coils | Coil | Coil | 514 | 541 | - |
| 7 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 14 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 49 | - |
| 1 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 202 | - |
| 15 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 177 | - |
| 2 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 438 | - |
| 9 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 421 | - |
| 13 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 438 | - |
| 6 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 538 | - |
| 11 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 511 | - |
| 5 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 527 | - |
| 12 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 587 | - |
| 10 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 582 | - |
| 4 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 755 | - |
| 3 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 746 | - |
| 8 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 800 | - |
| 16 | g2592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 814 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K23644 (twenty-four)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
