General information for g2609.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exostosin-3.
Parent gene
- The parent gene g2609 is located on chr_3: 19034093..19035700 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2609 | g2609.t1 | TSS | g2609.t1 | 19031543 | 19031543 |
| chr_3 | g2609 | g2609.t1 | isoform | g2609.t1 | 19032561 | 19035700 |
| chr_3 | g2609 | g2609.t1 | exon | g2609.t1.exon1 | 19032561 | 19032698 |
| chr_3 | g2609 | g2609.t1 | cds | g2609.t1.CDS1 | 19032561 | 19032698 |
| chr_3 | g2609 | g2609.t1 | exon | g2609.t1.exon2 | 19032771 | 19035006 |
| chr_3 | g2609 | g2609.t1 | cds | g2609.t1.CDS2 | 19032771 | 19035006 |
| chr_3 | g2609 | g2609.t1 | exon | g2609.t1.exon3 | 19035069 | 19035161 |
| chr_3 | g2609 | g2609.t1 | cds | g2609.t1.CDS3 | 19035069 | 19035161 |
| chr_3 | g2609 | g2609.t1 | exon | g2609.t1.exon4 | 19035220 | 19035391 |
| chr_3 | g2609 | g2609.t1 | cds | g2609.t1.CDS4 | 19035220 | 19035391 |
| chr_3 | g2609 | g2609.t1 | exon | g2609.t1.exon5 | 19035453 | 19035534 |
| chr_3 | g2609 | g2609.t1 | cds | g2609.t1.CDS5 | 19035453 | 19035534 |
| chr_3 | g2609 | g2609.t1 | exon | g2609.t1.exon6 | 19035596 | 19035700 |
| chr_3 | g2609 | g2609.t1 | cds | g2609.t1.CDS6 | 19035596 | 19035700 |
| chr_3 | g2609 | g2609.t1 | TTS | g2609.t1 | NA | NA |
Sequences
>g2609.t1 Gene=g2609 Length=2826
ATGTTTATGATGACTAGTAATATCTCATATCATTCAATGAAGGGAACTAACTTAAAGAAT
AGATGTATTCGTCTCACTTTTGTTGTGTTTTTGACATTTTTATTTTTCTACTTTCTCATT
CATCATTTTCTATCGGATGCTGATTCAAGTATCCAAAATGTAAATTATTATAAATCGCGG
TATCGATTAGAAAATATAGAAAATTATGAAGATTTTAGTGCATTAAAGGCAACTGATTTA
AAACAGCGAATAGCTGAAATGCTTAAAATCAAAAGTACAGTGTCAGCAGAATTGCGTGAA
TTAGAAGCAAAACGACAAAAACTTCAACTCGATATTTCAGGATATAATGCAAAAATTGAT
GAGCTTAAACAAGAACTTTCTCGTCAGCAAACGGAGCTAAATAGACTTAAAATATCTGTA
GAGCAAGCACAAGTAGCGCAAAGAGAAGCAGTTTTAAGAAATACACCTGAATTAGCACTT
CCTAAAGCGTTATACTCAAATGTTTTACCAAAAAATTATAAACCTTTGCTTGCCAGCGAG
TACCTTAAGTGCAAAATGTCAAATTGCTTTGATCATAGTCGATGTTCTATCACTTCTAGT
TTTCCAATTTATCTTTATGATCCAGATGTAGTTTCTGTAACTAATCAAGGATATGAAATT
GATATATTCCTTAAGACTACAATTAAACAAACGTTCGGTTATAATGCTCATTTAACGAAA
GACCCTAAAATAGCATGCATTTTTCTTATACTCGTTGGAGAAGCACTTTCTGATCAAGAA
ACTCTTCGAAACAATCGTTATGCCAATACAGTTGATATGAAAGCACCTCTCTCAAGTGAA
ATTCTTAATGTTACTGCTTTATATAAATTGAAATATTGGGCTTCAGATGGTCGCAATCAT
GTTCTTTTAAATCTTGCACGACGTGATTTGAGCACAGGATCGAGAAATGTATTTGCAAAT
GTTAACACAGGTCGTGCAATGTTAGTGCAATCAACATTTAATGAAAATCAATTTAGACAA
GGATTTGATCTTATTGTGCCACCAATACTTGGTTCACCAGGAGGCGATGTGTGGCAAGAG
TGTTCACAAATGTTGCCTGCTAGAAGGAAATATCTGCTTAGTTTTCAAGGAGAAATGACT
GCAATCAACAAATCAAATTCACAAATATCAGATGAGCAACAGCTTGATGAATTTATTATT
GAACATCTTAAAGAGATTTCCAATGGTATGCATTCCGATAAATTTTATCTTCAATTTGAA
TGCATTCCAGCAACTGAACAGACTAATTTAGCAGCCATAGAAGACTGGTATTTATGTGGC
ACTGATAATTCTCGTCGTACCATTTTAAAAGACTCAACTTTTGCATTAGTTTTGGTCCCT
GAAAGAAGTATTATTAGCTCGACGCTACTCCAAGCTCGTATATACGAGTCTTTACGTGCA
GGCGCAATACCTATTATTCTCGGTGGTGATCAAATCGAGTTGCCTTTCTCTGAAATGATT
GAATGGAGGCGAGCTGTGATGTTTTTACCAAAAGCACGTGTCACTGAGCTACATTTTCTT
CTTCGTTCCGTACCTGATATTGACTTACTTTTCATGAGGCGACAAGGAAGATTAATTTGG
GAACGATATTTGAGCTCTGTGCAAGCTACAATAGATACAATTGTTGCAAACATAAGAGAT
CGATTAGGAATCCCGCCTAAACCGATAGCTGCTGTTAAAGCCGTAAGTGTATTTAATTCA
ACGTTCATTCCACTTAAGTCCGATCCACCGATCATGGACATAGAACCGGAAGAGAGTTTA
GGACCAATTGAACCGCCTTATCCTTCGCCACAATTTCGTAGAAATTACACAGTTTTTCTC
ACTCAAAGACGAGAAATTTGGAATGATTGGGCTGATCCGTTTAATTTATATCCACATTTA
CCTTTCGATCCTGTTTTACCAAGTGACGCCAAATTTATTGGCTCAAATTTAGGTTTTCGC
CCTATAGGCAAAGGAGTTGGTGGAACTGGAAAAGAATTTGGTGAATCACTCGGTGGAAAT
CATCCACGAGAGCAATTTACAATAGTTATATTAACATATGAACGTGAACAAGTTTTGATG
GATTCATTAAGTCGTCTCTATGGCTTACCATATCTTCATAAAGTAATTGTTGTATGGAAT
TCGCCTAAACCACCATTAGAAGATTTACGTTGGCCTGAAATTGGTGTGCAAGTGGAGGTC
GTTAAAGCAGCAAGAAATTCACTTAATAACAGATTCTTGCCTTATGATGCAATTGAAACT
GAAGCAGTTTTATCAGTAGATGATGATGCTCATTTAAGACATGATGAAATTTTATTTGGT
TTTCGTGTATGGCGTGAACATCGTGATCAAATTGTTGGTTTTCCTGGACGCTATCACGCA
TGGAACATTAATGGAGCATGGAATTATAATTCAAATTATAGTTGTGAATTGAGTATGGTA
TTAACAGGTGCTGCATTCTTTCATAAATATTATACGTATCTTTATACTTATTGGTTGCCA
CAAGCTATAAGAGATAAAGTAGACGAGTATATGAATTGTGAAGATATTGCTATGAACTTT
TTAGTTTCACATATCACTCGTCAGCCTCCAAAAAAAGTAACATCTCGATGGACTTTTAGG
TGTCCTGTTTGTCCTGTCTCATTATCAGAAGATGACACTCATTTCCAAGAAAGACACAAA
TGCATAAATTTCTTTTCTAAAGTTTTCGGTTATACTCCACTACTTAACACACAATATCGA
GCAGACTCGATTTTATTCAAAACTCGAATTCCTCACGATAAGCAAAAATGCTTTAAATTT
ATATAA
>g2609.t1 Gene=g2609 Length=941
MFMMTSNISYHSMKGTNLKNRCIRLTFVVFLTFLFFYFLIHHFLSDADSSIQNVNYYKSR
YRLENIENYEDFSALKATDLKQRIAEMLKIKSTVSAELRELEAKRQKLQLDISGYNAKID
ELKQELSRQQTELNRLKISVEQAQVAQREAVLRNTPELALPKALYSNVLPKNYKPLLASE
YLKCKMSNCFDHSRCSITSSFPIYLYDPDVVSVTNQGYEIDIFLKTTIKQTFGYNAHLTK
DPKIACIFLILVGEALSDQETLRNNRYANTVDMKAPLSSEILNVTALYKLKYWASDGRNH
VLLNLARRDLSTGSRNVFANVNTGRAMLVQSTFNENQFRQGFDLIVPPILGSPGGDVWQE
CSQMLPARRKYLLSFQGEMTAINKSNSQISDEQQLDEFIIEHLKEISNGMHSDKFYLQFE
CIPATEQTNLAAIEDWYLCGTDNSRRTILKDSTFALVLVPERSIISSTLLQARIYESLRA
GAIPIILGGDQIELPFSEMIEWRRAVMFLPKARVTELHFLLRSVPDIDLLFMRRQGRLIW
ERYLSSVQATIDTIVANIRDRLGIPPKPIAAVKAVSVFNSTFIPLKSDPPIMDIEPEESL
GPIEPPYPSPQFRRNYTVFLTQRREIWNDWADPFNLYPHLPFDPVLPSDAKFIGSNLGFR
PIGKGVGGTGKEFGESLGGNHPREQFTIVILTYEREQVLMDSLSRLYGLPYLHKVIVVWN
SPKPPLEDLRWPEIGVQVEVVKAARNSLNNRFLPYDAIETEAVLSVDDDAHLRHDEILFG
FRVWREHRDQIVGFPGRYHAWNINGAWNYNSNYSCELSMVLTGAAFFHKYYTYLYTYWLP
QAIRDKVDEYMNCEDIAMNFLVSHITRQPPKKVTSRWTFRCPVCPVSLSEDDTHFQERHK
CINFFSKVFGYTPLLNTQYRADSILFKTRIPHDKQKCFKFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2609.t1 | Coils | Coil | Coil | 84 | 146 | - |
| 7 | g2609.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 682 | 936 | 3.9E-92 |
| 3 | g2609.t1 | PANTHER | PTHR11062:SF73 | EXOSTOSIN-LIKE 3 | 121 | 821 | 8.1E-98 |
| 4 | g2609.t1 | PANTHER | PTHR11062 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED | 121 | 821 | 8.1E-98 |
| 2 | g2609.t1 | Pfam | PF03016 | Exostosin family | 198 | 524 | 5.4E-54 |
| 1 | g2609.t1 | Pfam | PF09258 | Glycosyl transferase family 64 domain | 686 | 926 | 6.6E-94 |
| 9 | g2609.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 11 | g2609.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 10 | g2609.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 41 | 941 | - |
| 6 | g2609.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 684 | 928 | 2.81E-27 |
| 5 | g2609.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K02370 (alpha-1,4-N-acetylglucosaminyltransferase EXTL3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
