General information for g2609.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exostosin-3.
Parent gene
- The parent gene g2609 is located on chr_3: 19034093..19035700 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2609 | g2609.t2 | isoform | g2609.t2 | 19034093 | 19035700 |
| chr_3 | g2609 | g2609.t2 | exon | g2609.t2.exon1 | 19034093 | 19035006 |
| chr_3 | g2609 | g2609.t2 | cds | g2609.t2.CDS1 | 19034127 | 19035006 |
| chr_3 | g2609 | g2609.t2 | exon | g2609.t2.exon2 | 19035069 | 19035161 |
| chr_3 | g2609 | g2609.t2 | cds | g2609.t2.CDS2 | 19035069 | 19035161 |
| chr_3 | g2609 | g2609.t2 | exon | g2609.t2.exon3 | 19035220 | 19035391 |
| chr_3 | g2609 | g2609.t2 | cds | g2609.t2.CDS3 | 19035220 | 19035391 |
| chr_3 | g2609 | g2609.t2 | exon | g2609.t2.exon4 | 19035453 | 19035534 |
| chr_3 | g2609 | g2609.t2 | cds | g2609.t2.CDS4 | 19035453 | 19035534 |
| chr_3 | g2609 | g2609.t2 | exon | g2609.t2.exon5 | 19035596 | 19035700 |
| chr_3 | g2609 | g2609.t2 | cds | g2609.t2.CDS5 | 19035596 | 19035700 |
| chr_3 | g2609 | g2609.t2 | TSS | g2609.t2 | NA | NA |
| chr_3 | g2609 | g2609.t2 | TTS | g2609.t2 | NA | NA |
Sequences
>g2609.t2 Gene=g2609 Length=1366
CGGTGGTGATCAAATCGAGTTGCCTTTCTCTGAAATGATTGAATGGAGGCGAGCTGTGAT
GTTTTTACCAAAAGCACGTGTCACTGAGCTACATTTTCTTCTTCGTTCCGTACCTGATAT
TGACTTACTTTTCATGAGGCGACAAGGAAGATTAATTTGGGAACGATATTTGAGCTCTGT
GCAAGCTACAATAGATACAATTGTTGCAAACATAAGAGATCGATTAGGAATCCCGCCTAA
ACCGATAGCTGCTGTTAAAGCCGTAAGTGTATTTAATTCAACGTTCATTCCACTTAAGTC
CGATCCACCGATCATGGACATAGAACCGGAAGAGAGTTTAGGACCAATTGAACCGCCTTA
TCCTTCGCCACAATTTCGTAGAAATTACACAGTTTTTCTCACTCAAAGACGAGAAATTTG
GAATGATTGGGCTGATCCGTTTAATTTATATCCACATTTACCTTTCGATCCTGTTTTACC
AAGTGACGCCAAATTTATTGGCTCAAATTTAGGTTTTCGCCCTATAGGCAAAGGAGTTGG
TGGAACTGGAAAAGAATTTGGTGAATCACTCGGTGGAAATCATCCACGAGAGCAATTTAC
AATAGTTATATTAACATATGAACGTGAACAAGTTTTGATGGATTCATTAAGTCGTCTCTA
TGGCTTACCATATCTTCATAAAGTAATTGTTGTATGGAATTCGCCTAAACCACCATTAGA
AGATTTACGTTGGCCTGAAATTGGTGTGCAAGTGGAGGTCGTTAAAGCAGCAAGAAATTC
ACTTAATAACAGATTCTTGCCTTATGATGCAATTGAAACTGAAGCAGTTTTATCAGTAGA
TGATGATGCTCATTTAAGACATGATGAAATTTTATTTGGTTTTCGTGTATGGCGTGAACA
TCGTGATCAAATTGTTGGTTTTCCTGGACGCTATCACGCATGGAACATTAATGGAGCATG
GAATTATAATTCAAATTATAGTTGTGAATTGAGTATGGTATTAACAGGTGCTGCATTCTT
TCATAAATATTATACGTATCTTTATACTTATTGGTTGCCACAAGCTATAAGAGATAAAGT
AGACGAGTATATGAATTGTGAAGATATTGCTATGAACTTTTTAGTTTCACATATCACTCG
TCAGCCTCCAAAAAAAGTAACATCTCGATGGACTTTTAGGTGTCCTGTTTGTCCTGTCTC
ATTATCAGAAGATGACACTCATTTCCAAGAAAGACACAAATGCATAAATTTCTTTTCTAA
AGTTTTCGGTTATACTCCACTACTTAACACACAATATCGAGCAGACTCGATTTTATTCAA
AACTCGAATTCCTCACGATAAGCAAAAATGCTTTAAATTTATATAA
>g2609.t2 Gene=g2609 Length=443
MIEWRRAVMFLPKARVTELHFLLRSVPDIDLLFMRRQGRLIWERYLSSVQATIDTIVANI
RDRLGIPPKPIAAVKAVSVFNSTFIPLKSDPPIMDIEPEESLGPIEPPYPSPQFRRNYTV
FLTQRREIWNDWADPFNLYPHLPFDPVLPSDAKFIGSNLGFRPIGKGVGGTGKEFGESLG
GNHPREQFTIVILTYEREQVLMDSLSRLYGLPYLHKVIVVWNSPKPPLEDLRWPEIGVQV
EVVKAARNSLNNRFLPYDAIETEAVLSVDDDAHLRHDEILFGFRVWREHRDQIVGFPGRY
HAWNINGAWNYNSNYSCELSMVLTGAAFFHKYYTYLYTYWLPQAIRDKVDEYMNCEDIAM
NFLVSHITRQPPKKVTSRWTFRCPVCPVSLSEDDTHFQERHKCINFFSKVFGYTPLLNTQ
YRADSILFKTRIPHDKQKCFKFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2609.t2 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 184 | 438 | 0 |
| 2 | g2609.t2 | PANTHER | PTHR11062:SF286 | GLYCOSYLTRANSFERASE FAMILY 64 PROTEIN C4 | 180 | 422 | 0 |
| 3 | g2609.t2 | PANTHER | PTHR11062 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED | 180 | 422 | 0 |
| 1 | g2609.t2 | Pfam | PF09258 | Glycosyl transferase family 64 domain | 188 | 428 | 0 |
| 4 | g2609.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 186 | 430 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
