Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoglycerate mutase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2619 g2619.t6 TTS g2619.t6 19148691 19148691
chr_3 g2619 g2619.t6 isoform g2619.t6 19148907 19149730
chr_3 g2619 g2619.t6 exon g2619.t6.exon1 19148907 19149076
chr_3 g2619 g2619.t6 cds g2619.t6.CDS1 19148907 19149076
chr_3 g2619 g2619.t6 exon g2619.t6.exon2 19149133 19149730
chr_3 g2619 g2619.t6 cds g2619.t6.CDS2 19149133 19149730
chr_3 g2619 g2619.t6 TSS g2619.t6 19149957 19149957

Sequences

>g2619.t6 Gene=g2619 Length=768
ATGGCAAAGTATCAAATTGTTATGGTCAGACATGGTGAGAGTGAGTGGAATCAACTCAAT
TTGTTTTGCGGTTGGTTCAATGCTGACTTAAGTGATAAGGGTCGACAAGAGGCAATTGAC
GCAGGAAAGGCTATTAAAGAAGCTGGTCTCAAGTTTGATATCGCTCATACATCAGTTTTG
AAGCGTGCAAATTTGACACTCGACTCAATCCTTAAAGAATCTGGTCAAACTGGAATTCCC
ATTTACAAGACATGGCGTTTAAATGAACGTCACTATGGTGGTTTGACTGGCATGAATAAG
GCTGAGACTGCTGAAAAGTATGGTGAGGAACAAGTTAAGATCTGGCGTCGATCTTACGAT
ATTCCACCACCACCAATGGAAGAAGATCATAAATATTATAAAACAATTGTCGAAGATCCA
ATCTATGCTGATGGTCCCTCAAAAGATGAATTCCCTAAATTCGAGTCTTTGAAACTTACT
ATTCAGCGAACACTCCCATATTGGAATGAGACCATTATTCCTCAATTGAAGGAAGGCAAG
AAAATTATTATTGCTGCTCACGGTAACAGCTTGAGAGGCATTGTTAAACATCTTGATCAA
GAAATGTCTGATGAGGCTATTATGGGTTTGAATTTGCCAACTGGAATTCCATTTGTTTAT
GAGCTGGATGAGAACTTCAAACCAGTTGTCTCAATGAAATTCTTGGGTGATGAAGAAACA
GTAAGAAAAGCTATGGAGAGCGTTGCCAACCAAGGCAAAGCTAAGTAA

>g2619.t6 Gene=g2619 Length=255
MAKYQIVMVRHGESEWNQLNLFCGWFNADLSDKGRQEAIDAGKAIKEAGLKFDIAHTSVL
KRANLTLDSILKESGQTGIPIYKTWRLNERHYGGLTGMNKAETAEKYGEEQVKIWRRSYD
IPPPPMEEDHKYYKTIVEDPIYADGPSKDEFPKFESLKLTIQRTLPYWNETIIPQLKEGK
KIIIAAHGNSLRGIVKHLDQEMSDEAIMGLNLPTGIPFVYELDENFKPVVSMKFLGDEET
VRKAMESVANQGKAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2619.t6 CDD cd07067 HP_PGM_like 5 230 1.96116E-43
6 g2619.t6 Gene3D G3DSA:3.40.50.1240 - 1 255 8.0E-83
4 g2619.t6 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 235 40.097511
2 g2619.t6 PANTHER PTHR11931:SF8 PHOSPHOGLYCERATE MUTASE 2 2 255 2.3E-118
3 g2619.t6 PANTHER PTHR11931 PHOSPHOGLYCERATE MUTASE 2 255 2.3E-118
1 g2619.t6 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 129 1.4E-25
8 g2619.t6 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 -
9 g2619.t6 SMART SM00855 PGAM_5 5 194 1.9E-18
5 g2619.t6 SUPERFAMILY SSF53254 Phosphoglycerate mutase-like 4 244 5.13E-71
10 g2619.t6 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 253 3.0E-110

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004619 phosphoglycerate mutase activity MF
GO:0006096 glycolytic process BP
GO:0003824 catalytic activity MF
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed