Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2627 g2627.t2 TTS g2627.t2 19175104 19175104
chr_3 g2627 g2627.t2 isoform g2627.t2 19176106 19179140
chr_3 g2627 g2627.t2 exon g2627.t2.exon1 19176106 19177025
chr_3 g2627 g2627.t2 cds g2627.t2.CDS1 19176106 19177025
chr_3 g2627 g2627.t2 exon g2627.t2.exon2 19178416 19178581
chr_3 g2627 g2627.t2 cds g2627.t2.CDS2 19178416 19178581
chr_3 g2627 g2627.t2 exon g2627.t2.exon3 19178648 19178920
chr_3 g2627 g2627.t2 cds g2627.t2.CDS3 19178648 19178920
chr_3 g2627 g2627.t2 exon g2627.t2.exon4 19178983 19179140
chr_3 g2627 g2627.t2 cds g2627.t2.CDS4 19178983 19179003
chr_3 g2627 g2627.t2 TSS g2627.t2 NA NA

Sequences

>g2627.t2 Gene=g2627 Length=1517
AGCATCACAAAATCTGCATAATATGATGTTTAATGGCTTAATCAATACTTATACACAATT
TTTCAATCAAAATCCTTCAGGAAGAATTCTCAATCGATTTTCAAAGGATATTGGTAGTAT
TGACACACAATTGCCTAATGTCATGTTTGAATGTATTTTTTGTGCTTGAATTTTTCGCTA
TTATGATTCTTGTGTCACTTGTCAATGTTTATTTTGTAATTCCTACCTTAATTATGGTAG
TTATTCTTATTGGTATGCGACATATTTATGTAAGTACATCGAGAAACATTAAGAGAGTTG
AGAGCATCTCTAAATCACCAATTTTCGCACATACAAATGCAACTTTGCAAGGTTTAAGTA
CAATAAGAGCTTTAAAGGCAGAAAATGCAGTTATCGAGAATTTCAATTACTATGTCGATC
ATAATACCTCAGCATGGTTCTCTTATTGGACAGTTACGAGAGCATTCGCTTTTTGGCTCG
ACATCGTTTGTATACTTTATATTGCAATCATCACTTTCTCATTTGTTGAAATGAATGTCG
AAAATGTACCTGGAGGAAATGTGGGACTTGCAATTACACAAATTATCGGATTAATTGGAA
TGCTACAATGGGGCATCCGTCAGACCAGTGAACTTGAAAATCAAATGGTCTGTGTAGAAC
GAGTTATGGAGTATGCAAATTTGCCATCAGAAATGAAAAATGAAAAAGCTCCACCGGCAA
ATTGGCCATCAAATGGTGAAGTTGAGTTTGATAATCTTTCACTTTATTATAAAAATGAAG
AATGCAAGGCTTCAATTAGTAACTTGAGCATTAAGATTAAACCACAAGAAAAAGTTGGCA
TAGTTGGTCGTACAGGCAGCGGAAAATCGTCAATAATTCAAGCACTTTTTAGAATGACAA
GAATTGAAGGTAGCATAAAAATTGATGGAATCGACACTCAACAAATTGACCTCTACAACC
TTCGCAAAAACATTTCAATAATTCCTCAAGAACCAGTACTTTTCAGCGGTTCGTTACGTT
TTAATTTGGATGCTTTTAACGAAAATTCAGACGATGCAATTTGGAAAGCACTCGAACTAG
TTGAACTGAAAGAGACAATAAAAGCGTTAACTGGTGGATTGGAATGTAAAATTTCTGATG
GTGGCAGCAATTTCTCTGTTGGTCAGCGACAACTTATTTGCCTAGCTCGAGCTTTATTAC
GAAAGAATAAAATTTTAGTTTTGGATGAAGCGACAGCAAATGTAGATTATGAAACGGACA
AACTTATTCAAAAAACAATTAGCACAGAATTCGCAGACTGCACTTTAATTGTTATCGCAC
ATCGATTAAATACTGTCATACATTCAGATAAAATTCTCGTCATGGAGGGCGGCAATCTTG
TTGAATTTGATCATCCTTATAATCTACTTAAAAATGAAAATGGATTCTTGCGGAAACTTG
TCAATCAGACGTCTCTATCATTAATAGATGAAGCTGAAAAAAGCTATCAGGAACAAGAAT
CAAAAAAACTTAAATAG

>g2627.t2 Gene=g2627 Length=459
MSCLNVFFVLEFFAIMILVSLVNVYFVIPTLIMVVILIGMRHIYVSTSRNIKRVESISKS
PIFAHTNATLQGLSTIRALKAENAVIENFNYYVDHNTSAWFSYWTVTRAFAFWLDIVCIL
YIAIITFSFVEMNVENVPGGNVGLAITQIIGLIGMLQWGIRQTSELENQMVCVERVMEYA
NLPSEMKNEKAPPANWPSNGEVEFDNLSLYYKNEECKASISNLSIKIKPQEKVGIVGRTG
SGKSSIIQALFRMTRIEGSIKIDGIDTQQIDLYNLRKNISIIPQEPVLFSGSLRFNLDAF
NENSDDAIWKALELVELKETIKALTGGLECKISDGGSNFSVGQRQLICLARALLRKNKIL
VLDEATANVDYETDKLIQKTISTEFADCTLIVIAHRLNTVIHSDKILVMEGGNLVEFDHP
YNLLKNENGFLRKLVNQTSLSLIDEAEKSYQEQESKKLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g2627.t2 CDD cd18580 ABC_6TM_ABCC_D2 6 180 3.11899E-60
17 g2627.t2 CDD cd03244 ABCC_MRP_domain2 200 420 1.43425E-129
8 g2627.t2 Gene3D G3DSA:1.20.1560.10 - 3 186 1.1E-15
7 g2627.t2 Gene3D G3DSA:3.40.50.300 - 187 439 5.4E-83
3 g2627.t2 PANTHER PTHR24223:SF360 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659-LIKE PROTEIN-RELATED 9 444 1.5E-168
4 g2627.t2 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 9 444 1.5E-168
1 g2627.t2 Pfam PF00664 ABC transporter transmembrane region 8 127 1.9E-13
2 g2627.t2 Pfam PF00005 ABC transporter 221 367 8.4E-32
11 g2627.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
14 g2627.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 39 -
9 g2627.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 40 109 -
15 g2627.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 110 130 -
12 g2627.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 131 141 -
13 g2627.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 160 -
10 g2627.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 459 -
21 g2627.t2 ProSitePatterns PS00211 ABC transporters family signature. 339 353 -
23 g2627.t2 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 6 168 16.645
24 g2627.t2 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 202 436 15.406
22 g2627.t2 SMART SM00382 AAA_5 229 413 8.7E-14
5 g2627.t2 SUPERFAMILY SSF90123 ABC transporter transmembrane region 7 185 4.45E-27
6 g2627.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 193 432 9.31E-70
20 g2627.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 38 -
19 g2627.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 109 131 -
18 g2627.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 160 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values