Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2627 g2627.t3 TTS g2627.t3 19175953 19175953
chr_3 g2627 g2627.t3 isoform g2627.t3 19176518 19178652
chr_3 g2627 g2627.t3 exon g2627.t3.exon1 19176518 19177025
chr_3 g2627 g2627.t3 cds g2627.t3.CDS1 19176520 19177025
chr_3 g2627 g2627.t3 exon g2627.t3.exon2 19178416 19178581
chr_3 g2627 g2627.t3 cds g2627.t3.CDS2 19178416 19178482
chr_3 g2627 g2627.t3 exon g2627.t3.exon3 19178648 19178652
chr_3 g2627 g2627.t3 TSS g2627.t3 NA NA

Sequences

>g2627.t3 Gene=g2627 Length=679
CCTCAGCATGGTTCTCTTATTGGACAGTTACGAGAGCATTCGCTTTTTGGCTCGACATCG
TTTGTATACTTTATATTGCAATCATCACTTTCTCATTTGTTGAAATGAATGTCGAAAATG
TACCTGGAGGAAATGTGGGACTTGCAATTACACAAATTATCGGATTAATTGGAATGCTAC
AATGGGGCATCCGTCAGACCAGTGAACTTGAAAATCAAATGGTCTGTGTAGAACGAGTTA
TGGAGTATGCAAATTTGCCATCAGAAATGAAAAATGAAAAAGCTCCACCGGCAAATTGGC
CATCAAATGGTGAAGTTGAGTTTGATAATCTTTCACTTTATTATAAAAATGAAGAATGCA
AGGCTTCAATTAGTAACTTGAGCATTAAGATTAAACCACAAGAAAAAGTTGGCATAGTTG
GTCGTACAGGCAGCGGAAAATCGTCAATAATTCAAGCACTTTTTAGAATGACAAGAATTG
AAGGTAGCATAAAAATTGATGGAATCGACACTCAACAAATTGACCTCTACAACCTTCGCA
AAAACATTTCAATAATTCCTCAAGAACCAGTACTTTTCAGCGGTTCGTTACGTTTTAATT
TGGATGCTTTTAACGAAAATTCAGACGATGCAATTTGGAAAGCACTCGAACTAGTTGAAC
TGAAAGAGACAATAAAAGC

>g2627.t3 Gene=g2627 Length=191
MNVENVPGGNVGLAITQIIGLIGMLQWGIRQTSELENQMVCVERVMEYANLPSEMKNEKA
PPANWPSNGEVEFDNLSLYYKNEECKASISNLSIKIKPQEKVGIVGRTGSGKSSIIQALF
RMTRIEGSIKIDGIDTQQIDLYNLRKNISIIPQEPVLFSGSLRFNLDAFNENSDDAIWKA
LELVELKETIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2627.t3 Gene3D G3DSA:3.40.50.300 - 54 191 1.8E-39
2 g2627.t3 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 8 190 3.7E-75
3 g2627.t3 PANTHER PTHR24223:SF324 LD17001P 8 190 3.7E-75
1 g2627.t3 Pfam PF00005 ABC transporter 90 188 5.5E-19
9 g2627.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
10 g2627.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
8 g2627.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 30 191 -
5 g2627.t3 SUPERFAMILY SSF90123 ABC transporter transmembrane region 7 54 9.68E-6
6 g2627.t3 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 62 190 3.47E-29
4 g2627.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 29 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values