General information for g2634.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein lethal(2) giant larvae.
Parent gene
- The parent gene g2634 is located on chr_3: 19210865..19211938 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2634 | g2634.t2 | TSS | g2634.t2 | 19204545 | 19204545 |
| chr_3 | g2634 | g2634.t2 | isoform | g2634.t2 | 19204750 | 19207859 |
| chr_3 | g2634 | g2634.t2 | exon | g2634.t2.exon1 | 19204750 | 19204898 |
| chr_3 | g2634 | g2634.t2 | exon | g2634.t2.exon2 | 19205806 | 19206048 |
| chr_3 | g2634 | g2634.t2 | cds | g2634.t2.CDS1 | 19205962 | 19206048 |
| chr_3 | g2634 | g2634.t2 | exon | g2634.t2.exon3 | 19207539 | 19207859 |
| chr_3 | g2634 | g2634.t2 | cds | g2634.t2.CDS2 | 19207539 | 19207859 |
| chr_3 | g2634 | g2634.t2 | TTS | g2634.t2 | NA | NA |
Sequences
>g2634.t2 Gene=g2634 Length=713
ACACCTCAACAAAAAAATAATAATTTTATTATCGCATTTTGTGCCTCAATTACATTTTCT
ACCTTATTGTTATCAGTTAAACTTTGTTTTTCGACTCGATAGGAGTGAATTTGTCGTGTT
GAAAATATTTGGATAACTTTATATATCAGATTAGAATTTAATATTTTTGGAGAAAAACGA
CGAGAAAGAAGGAAAGAATTAGAGTTCGTGTGGTGAAGAATGAATTAAGAAGTTTAAAGC
GCGAGAATTGAAAGAAAATATTGTAAATTTGTCAAAGAAAATAATAATTATTGCTCATTA
TTATCATGCTAAAATTTATTCGATCGAAAGGACATCAGCAACCATCAGCTGAACGTCAAA
AATTGCAAAAGGAATTATATGCATTTCGTAAGACGGTACAACATGGATTTCCACACAAAC
CGTCTTCGCTTGCTTATGATTCTGTTTTGAAATTAATGGCTATCGGCACAACTGTCGGTG
TCATTAAGGTGTTTGGTCAGCCAGGTGTGGAATTTTATGGACAAACAACGCCAATCATCA
CATCTACAAATCCCAGCCCAACTGATTGTACAGTTCAAATTCTTGAATTCATTCCTGGAA
ATGGTCGATTGCTTTCATTGACATCAAATAATCAATTGACACTTTGGGAACCAGCTGGTA
CACTTTTAGTTGCCATCAAGACACTTGCTTTGGAGAAATTTAAAAAAGTTTCA
>g2634.t2 Gene=g2634 Length=136
MLKFIRSKGHQQPSAERQKLQKELYAFRKTVQHGFPHKPSSLAYDSVLKLMAIGTTVGVI
KVFGQPGVEFYGQTTPIITSTNPSPTDCTVQILEFIPGNGRLLSLTSNNQLTLWEPAGTL
LVAIKTLALEKFKKVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g2634.t2 | PANTHER | PTHR10241 | LETHAL 2 GIANT LARVAE PROTEIN | 8 | 132 | 0.00e+00 |
| g2634.t2 | PANTHER | PTHR10241:SF29 | LETHAL(2) GIANT LARVAE PROTEIN | 8 | 132 | 0.00e+00 |
| g2634.t2 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 117 | 2.44e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
