Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate 1-dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2640 g2640.t1 TTS g2640.t1 19245256 19245256
chr_3 g2640 g2640.t1 isoform g2640.t1 19245477 19248964
chr_3 g2640 g2640.t1 exon g2640.t1.exon1 19245477 19246536
chr_3 g2640 g2640.t1 cds g2640.t1.CDS1 19245477 19246536
chr_3 g2640 g2640.t1 exon g2640.t1.exon2 19246614 19246978
chr_3 g2640 g2640.t1 cds g2640.t1.CDS2 19246614 19246978
chr_3 g2640 g2640.t1 exon g2640.t1.exon3 19247040 19247224
chr_3 g2640 g2640.t1 cds g2640.t1.CDS3 19247040 19247224
chr_3 g2640 g2640.t1 exon g2640.t1.exon4 19248949 19248964
chr_3 g2640 g2640.t1 cds g2640.t1.CDS4 19248949 19248964
chr_3 g2640 g2640.t1 TSS g2640.t1 19249269 19249269

Sequences

>g2640.t1 Gene=g2640 Length=1626
ATGATGCAAAATAACGTATCTCAAAAAATCAATCTACTAAATCAACTTACGAGGCAGAAT
AGCAACGGCAGTAATAACGGCAATATGAATAATCAAAAAACTCTCGATATTATCCGTGAG
GATCTTGGTCATCTAGTTGAAACGGAAGGCACATACTGGGACAGTCGACATCCGCATATT
TTTGTTGTTATGGGTGCTTCGGGAGATTTGGCAAAGAAGAAAATTTATCCAACACTCTGG
TGGCTTTATCGTGACAATTTATTGCCGCCTGCGACAATTTTCATTGGTTACGCCCGTAGC
AAACTTTCCATCGAAGAGTTACGCAGCAAGTGTGATCAGTACATGAAGGTGAAAGATGAT
GAAAAGGAAAAATACGAGCAATTTTGGAAGATTAATTACTACGTTGTTGGCTCTTATACT
GAGCGTCGTGATTTTGAAATGTTGAATCAAGAAATGTCGAAGCATGATAATCTATCGACT
GCTAATCGTCTCTTCTATCTCGCCCTACCGCCGTCTGTATTTGAATCTGTTACTGTTAAC
ATTCGTAATACATGCATGGCTTTACAAGGTTGGAGTCGTATAATTGTAGAGAAGCCATTT
GGAAAAGATTCGCAGAGTTCGAAAGTACTTAGTGATCATTTAGCAAGTCTTTTCAGTGAA
GATCAATTATATCGTATTGATCATTATCTAGGAAAGGAAATGGTTCAAAATTTAATGTCA
ATTCGATTCAGCAATCAACTTTTTAATCCCACATGGAATCGTAACAACATTGCATCAGTC
TTAATATCATTTAAAGAGCCATTTGGCACTGAAGGTAGAGGTGGATATTTTGACGAGTTT
GGAATTATTAGAGATATTATGCAAAATCATTTATTGCAAATATTGACATTGGTCGCTATG
GAAAAACCGGCATCTGTTCATCCTGATGATATTCGTGATGAGAAAGTGAAAGTACTTAAA
TGTATTCAACCATTGACACTTGATGATGTTGTTTTGGGTCAATATGTTGGTGACCCTGAC
GGTACTGGTGATGCTAGATTTGGTTATTTGGATGATAAAACAGTACCAGAAGGTTCAACA
ACACCAACTTATGCACTCGCTGTTCTTCGCATTAATAATGAACGATGGGATGGTGTCAAT
TTTATTTTACGTTGTGGTAAAGCTCTTAATGAACGAAAAGCAGAAGTTCGAATTCAATAC
AAGGACGTACCTGGTGATATTTTTGGTGGAAAAGCAAAACGTAATGAACTTGTTATTAGA
GTTCAACCGGGTGAAGCACTTTATATTAAGATGATGACTAAATCTCCTGGCATTACTTTC
GATTTGGAAGAAACTGAATTAGATTTAACTTATCAGCACCGATATAAAGGTGTAGTCTTA
CCTGATGCATATGAAAGACTTATTCTTGACGTCTTCTGTGGAAGTCAAATGCATTTCGTT
AGAAGTGATGAACTTAGCGAAGCTTGGCGAATTTTCACTCCACTTTTGCATAACATTGAA
AATAATAAAATCAGACCAATTGAGTATATTTATGGAAGTCGTGGACCAAAAGAAGCAGAT
GAAAAATGTATGCAAGCTAATTTTAAATTTACTGGTACTTACAAGTGGCACAAGAAGCAC
GAATAA

>g2640.t1 Gene=g2640 Length=541
MMQNNVSQKINLLNQLTRQNSNGSNNGNMNNQKTLDIIREDLGHLVETEGTYWDSRHPHI
FVVMGASGDLAKKKIYPTLWWLYRDNLLPPATIFIGYARSKLSIEELRSKCDQYMKVKDD
EKEKYEQFWKINYYVVGSYTERRDFEMLNQEMSKHDNLSTANRLFYLALPPSVFESVTVN
IRNTCMALQGWSRIIVEKPFGKDSQSSKVLSDHLASLFSEDQLYRIDHYLGKEMVQNLMS
IRFSNQLFNPTWNRNNIASVLISFKEPFGTEGRGGYFDEFGIIRDIMQNHLLQILTLVAM
EKPASVHPDDIRDEKVKVLKCIQPLTLDDVVLGQYVGDPDGTGDARFGYLDDKTVPEGST
TPTYALAVLRINNERWDGVNFILRCGKALNERKAEVRIQYKDVPGDIFGGKAKRNELVIR
VQPGEALYIKMMTKSPGITFDLEETELDLTYQHRYKGVVLPDAYERLILDVFCGSQMHFV
RSDELSEAWRIFTPLLHNIENNKIRPIEYIYGSRGPKEADEKCMQANFKFTGTYKWHKKH
E

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2640.t1 Coils Coil Coil 104 124 -
13 g2640.t1 Gene3D G3DSA:3.40.50.720 - 61 480 6.6E-182
14 g2640.t1 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 227 521 6.6E-182
5 g2640.t1 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 58 538 87.599884
3 g2640.t1 PANTHER PTHR23429:SF0 GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 58 532 6.2E-217
4 g2640.t1 PANTHER PTHR23429 GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 58 532 6.2E-217
16 g2640.t1 PIRSF PIRSF000110 G6PD 26 533 6.7E-171
7 g2640.t1 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 193 206 3.8E-54
9 g2640.t1 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 217 245 3.8E-54
8 g2640.t1 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 269 286 3.8E-54
6 g2640.t1 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 287 303 3.8E-54
10 g2640.t1 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 375 401 3.8E-54
1 g2640.t1 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 62 237 9.0E-61
2 g2640.t1 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 239 528 2.0E-112
17 g2640.t1 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 227 233 -
11 g2640.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 57 238 1.38E-79
12 g2640.t1 SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 227 537 2.84E-112
18 g2640.t1 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 58 528 1.3E-180

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0050661 NADP binding MF
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0006006 glucose metabolic process BP
GO:0055114 NA NA
GO:0004345 glucose-6-phosphate dehydrogenase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values