Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate 1-dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2640 g2640.t2 TTS g2640.t2 19245256 19245256
chr_3 g2640 g2640.t2 isoform g2640.t2 19245477 19246536
chr_3 g2640 g2640.t2 exon g2640.t2.exon1 19245477 19246536
chr_3 g2640 g2640.t2 cds g2640.t2.CDS1 19245477 19246403
chr_3 g2640 g2640.t2 TSS g2640.t2 NA NA

Sequences

>g2640.t2 Gene=g2640 Length=1060
AGGTTGGAGTCGTATAATTGTAGAGAAGCCATTTGGAAAAGATTCGCAGAGTTCGAAAGT
ACTTAGTGATCATTTAGCAAGTCTTTTCAGTGAAGATCAATTATATCGTATTGATCATTA
TCTAGGAAAGGAAATGGTTCAAAATTTAATGTCAATTCGATTCAGCAATCAACTTTTTAA
TCCCACATGGAATCGTAACAACATTGCATCAGTCTTAATATCATTTAAAGAGCCATTTGG
CACTGAAGGTAGAGGTGGATATTTTGACGAGTTTGGAATTATTAGAGATATTATGCAAAA
TCATTTATTGCAAATATTGACATTGGTCGCTATGGAAAAACCGGCATCTGTTCATCCTGA
TGATATTCGTGATGAGAAAGTGAAAGTACTTAAATGTATTCAACCATTGACACTTGATGA
TGTTGTTTTGGGTCAATATGTTGGTGACCCTGACGGTACTGGTGATGCTAGATTTGGTTA
TTTGGATGATAAAACAGTACCAGAAGGTTCAACAACACCAACTTATGCACTCGCTGTTCT
TCGCATTAATAATGAACGATGGGATGGTGTCAATTTTATTTTACGTTGTGGTAAAGCTCT
TAATGAACGAAAAGCAGAAGTTCGAATTCAATACAAGGACGTACCTGGTGATATTTTTGG
TGGAAAAGCAAAACGTAATGAACTTGTTATTAGAGTTCAACCGGGTGAAGCACTTTATAT
TAAGATGATGACTAAATCTCCTGGCATTACTTTCGATTTGGAAGAAACTGAATTAGATTT
AACTTATCAGCACCGATATAAAGGTGTAGTCTTACCTGATGCATATGAAAGACTTATTCT
TGACGTCTTCTGTGGAAGTCAAATGCATTTCGTTAGAAGTGATGAACTTAGCGAAGCTTG
GCGAATTTTCACTCCACTTTTGCATAACATTGAAAATAATAAAATCAGACCAATTGAGTA
TATTTATGGAAGTCGTGGACCAAAAGAAGCAGATGAAAAATGTATGCAAGCTAATTTTAA
ATTTACTGGTACTTACAAGTGGCACAAGAAGCACGAATAA

>g2640.t2 Gene=g2640 Length=308
MVQNLMSIRFSNQLFNPTWNRNNIASVLISFKEPFGTEGRGGYFDEFGIIRDIMQNHLLQ
ILTLVAMEKPASVHPDDIRDEKVKVLKCIQPLTLDDVVLGQYVGDPDGTGDARFGYLDDK
TVPEGSTTPTYALAVLRINNERWDGVNFILRCGKALNERKAEVRIQYKDVPGDIFGGKAK
RNELVIRVQPGEALYIKMMTKSPGITFDLEETELDLTYQHRYKGVVLPDAYERLILDVFC
GSQMHFVRSDELSEAWRIFTPLLHNIENNKIRPIEYIYGSRGPKEADEKCMQANFKFTGT
YKWHKKHE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2640.t2 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 1 308 0
2 g2640.t2 PANTHER PTHR23429:SF0 GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1 299 0
3 g2640.t2 PANTHER PTHR23429 GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 1 299 0
4 g2640.t2 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 36 53 0
6 g2640.t2 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 54 70 0
5 g2640.t2 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 168 0
1 g2640.t2 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 6 295 0
7 g2640.t2 SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1 304 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0050661 NADP binding MF
GO:0006006 glucose metabolic process BP
GO:0055114 NA NA
GO:0004345 glucose-6-phosphate dehydrogenase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values