General information for g2645.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Vacuolar protein sorting-associated protein 26.
Parent gene
- The parent gene g2645 is located on chr_3: 19306226..19306934 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2645 | g2645.t10 | TSS | g2645.t10 | 19304175 | 19304175 |
| chr_3 | g2645 | g2645.t10 | isoform | g2645.t10 | 19304257 | 19306226 |
| chr_3 | g2645 | g2645.t10 | exon | g2645.t10.exon1 | 19304257 | 19304259 |
| chr_3 | g2645 | g2645.t10 | exon | g2645.t10.exon2 | 19304317 | 19304463 |
| chr_3 | g2645 | g2645.t10 | exon | g2645.t10.exon3 | 19304724 | 19304790 |
| chr_3 | g2645 | g2645.t10 | exon | g2645.t10.exon4 | 19304862 | 19305027 |
| chr_3 | g2645 | g2645.t10 | exon | g2645.t10.exon5 | 19305101 | 19305376 |
| chr_3 | g2645 | g2645.t10 | exon | g2645.t10.exon6 | 19305448 | 19306226 |
| chr_3 | g2645 | g2645.t10 | cds | g2645.t10.CDS1 | 19305495 | 19306226 |
| chr_3 | g2645 | g2645.t10 | TTS | g2645.t10 | 19307010 | 19307010 |
Sequences
>g2645.t10 Gene=g2645 Length=1438
ATGAACTTTCTGGGATTCGGGCAAACAGCAGATATTGATGTAGTTTTTGCGGACAGTGAA
AACAGAAAATATGCTGATTGTCGAATGGACGAGAATGGAAAAAAGGAAAAATTATTACTC
TATTATGATGGAGAAACGATTTCGGGAAAGGTCAACGTAACGTTAAAGAAACCAGGCACT
AAGCTTGAACATCAGGGAATAAAAATCGAATTGATAGGCCAAATTGAATTATTCTATGAT
CGCGGAAATCATCATGAATTTTTGACACAGCTCAAAGAGCTTGCACGTCATGGTGATCTT
ATTAAAAACACCAGCTATCCATTTGAATTTCCAAATGTAGAAAAGCCGTATGAAGTGTAT
ACGGGCTCTAATGTTCGATTGAGATATTTTCTTCGTGTGACAATTGTTCGACGAATCAGT
GATATTGTACGTGAAATCGATATTGCTGTTCATACATTAAGCAGCTATCCGGAAATGAAT
AGTCCGATCAAAATGGAAGTTGGAATTGAAGACTGCCTTCACATAGAATTTGAGTACAAC
AAGAGCAAATATCATCTAAAAGATGTCATTGTGGGAAAAATTTATTTTTTGTTGGTTCGC
ATCAAAATTAAGCATATGGAAATAGCTATAATTAAGAGAGAGACAACTGGTGCTGGTTAG
TTCAAATGTTTTTACTGAAAATGAAACTATAGCAAAATATGAGATTATGGATGGAGCTCC
CGTCAAAGGCGAAAGTATTCCGATTCGTGTATTTTTAGCTGGCTACGATTTGACGCCAAC
AATGAGGGACATTAATAAGAAATTTTCTGTTCGCTATTTTCTCAATTTAGTCCTAATGGA
TACTGAAGATCGACGTTATTTTAAACAACAGGAGATCACATTATGGCGTAAGTCAGAAAA
GACAAGAAAATCACTCTCGAATAGCGCAATAGGTGGTACAGCATCAACACAAGGAAGCAC
CAATAATCTGACACAAGCTCAGCAAAATGCAACTATGCCTACACATTTAGTTCAAGGTGC
ATCCTCAATTCATACATCGTCTGATATCCAAGGAAGTCACACCTCGCCAGCTAGTTCATC
TAATGTCGTCAGTGCTTCAGCTGCTGTTGATCATCCAAACATGGGACTATTTACAGAAGA
AGACAGTCCACAACATGAAGCGCAATCCAAAACTCGAAGCAATCCATTAGCATTTGACAC
AGACGAAGATAAGACACCAAGCAAAGAGGAAGACGACGCACCACTTTCAGCTTCAAAAGA
ACAACCACAACAACAAAAATCTATTGATGAATCATCATCACTCTTTGATGAACCTTCAGC
CACGATCACCGAGCAACAACAATCACAATCAAATAATACTGCAATAAGCAATAATGACGG
TGAAATTGAAACATCAGCGGCGACGGCTGATAGAGAAGCATCAACAGCAAAGGATTAA
>g2645.t10 Gene=g2645 Length=243
MDGAPVKGESIPIRVFLAGYDLTPTMRDINKKFSVRYFLNLVLMDTEDRRYFKQQEITLW
RKSEKTRKSLSNSAIGGTASTQGSTNNLTQAQQNATMPTHLVQGASSIHTSSDIQGSHTS
PASSSNVVSASAAVDHPNMGLFTEEDSPQHEAQSKTRSNPLAFDTDEDKTPSKEEDDAPL
SASKEQPQQQKSIDESSSLFDEPSATITEQQQSQSNNTAISNNDGEIETSAATADREAST
AKD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2645.t10 | Gene3D | G3DSA:2.60.40.640 | - | 1 | 106 | 1.2E-38 |
| 6 | g2645.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 84 | - |
| 9 | g2645.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 84 | - |
| 8 | g2645.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 130 | - |
| 5 | g2645.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 243 | - |
| 4 | g2645.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 181 | - |
| 7 | g2645.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 236 | - |
| 2 | g2645.t10 | PANTHER | PTHR12233:SF5 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26B | 1 | 82 | 3.1E-32 |
| 3 | g2645.t10 | PANTHER | PTHR12233 | VACUOLAR PROTEIN SORTING 26 RELATED | 1 | 82 | 3.1E-32 |
| 1 | g2645.t10 | Pfam | PF03643 | Vacuolar protein sorting-associated protein 26 | 1 | 48 | 3.4E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006886 | intracellular protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed