General information for g2653.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative peptidyl-prolyl cis-trans isomerase dodo.
Parent gene
- The parent gene g2653 is located on chr_3: 19360145..19360711 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2653 | g2653.t1 | TTS | g2653.t1 | 19359942 | 19359942 |
| chr_3 | g2653 | g2653.t1 | isoform | g2653.t1 | 19360145 | 19360711 |
| chr_3 | g2653 | g2653.t1 | exon | g2653.t1.exon1 | 19360145 | 19360524 |
| chr_3 | g2653 | g2653.t1 | cds | g2653.t1.CDS1 | 19360145 | 19360524 |
| chr_3 | g2653 | g2653.t1 | exon | g2653.t1.exon2 | 19360609 | 19360711 |
| chr_3 | g2653 | g2653.t1 | cds | g2653.t1.CDS2 | 19360609 | 19360711 |
| chr_3 | g2653 | g2653.t1 | TSS | g2653.t1 | 19360781 | 19360781 |
Sequences
>g2653.t1 Gene=g2653 Length=483
ATGCCGAACGAAGATTCTGGTGATGAAATTATTCCTGAAGGATGGGAAAAGAGAAAATCT
CGATCGACTGGTATGGTTTATTACTTGAATATTTATACGAAAGAATCACAATGGGAAAAA
CCAGAAACACCAGCATCAAATGAGTGCAGTGAAGTTGAAGCATCACACTTATTGGTAAAA
CATAGTGGAAGTAGACGTCCATCGTCTCATCGAGAAGAAAAAATTACGCGCAGTAAAGAA
GAAGCAAGAAAATTACTCGAAGGATATCGTGAACAAATTGAGAAAGGTGAAGCTGAATTT
GCAGAATTGGCATCAAAATACAGTGATTGTTCATCATATAAGAAAGGCGGATCATTGGGA
CGTTTTAAGAGAGGTGTTATGCAGAAGCCATTTGAGGATGCAGCATTTAGTCTTAAAGTG
AATGAAATGAGCGACATCGTCGATACTGATAGTGGATTACACATTATCCTACGAACTAAA
TAA
>g2653.t1 Gene=g2653 Length=160
MPNEDSGDEIIPEGWEKRKSRSTGMVYYLNIYTKESQWEKPETPASNECSEVEASHLLVK
HSGSRRPSSHREEKITRSKEEARKLLEGYREQIEKGEAEFAELASKYSDCSSYKKGGSLG
RFKRGVMQKPFEDAAFSLKVNEMSDIVDTDSGLHIILRTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2653.t1 | CDD | cd00201 | WW | 12 | 42 | 8.19607E-10 |
| 8 | g2653.t1 | Coils | Coil | Coil | 72 | 106 | - |
| 7 | g2653.t1 | Gene3D | G3DSA:2.20.70.10 | - | 10 | 38 | 8.1E-11 |
| 6 | g2653.t1 | Gene3D | G3DSA:3.10.50.40 | - | 39 | 160 | 1.2E-48 |
| 13 | g2653.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 79 | - |
| 3 | g2653.t1 | PANTHER | PTHR10657 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 12 | 159 | 1.1E-75 |
| 2 | g2653.t1 | Pfam | PF00397 | WW domain | 12 | 41 | 6.5E-12 |
| 1 | g2653.t1 | Pfam | PF00639 | PPIC-type PPIASE domain | 56 | 159 | 2.1E-24 |
| 12 | g2653.t1 | ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 15 | 41 | - |
| 11 | g2653.t1 | ProSitePatterns | PS01096 | PpiC-type peptidyl-prolyl cis-trans isomerase signature. | 100 | 120 | - |
| 15 | g2653.t1 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 9 | 43 | 14.304 |
| 14 | g2653.t1 | ProSiteProfiles | PS50198 | PpiC-type peptidyl-prolyl cis-trans isomerase family profile. | 49 | 160 | 27.482 |
| 10 | g2653.t1 | SMART | SM00456 | ww_5 | 10 | 43 | 4.9E-9 |
| 5 | g2653.t1 | SUPERFAMILY | SSF51045 | WW domain | 11 | 44 | 6.38E-10 |
| 4 | g2653.t1 | SUPERFAMILY | SSF54534 | FKBP-like | 49 | 159 | 1.57E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K09578 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
