General information for g2653.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2653 is located on chr_3: 19360145..19360711 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2653 | g2653.t3 | TTS | g2653.t3 | 19359942 | 19359942 |
| chr_3 | g2653 | g2653.t3 | isoform | g2653.t3 | 19360145 | 19360461 |
| chr_3 | g2653 | g2653.t3 | exon | g2653.t3.exon1 | 19360145 | 19360461 |
| chr_3 | g2653 | g2653.t3 | cds | g2653.t3.CDS1 | 19360145 | 19360249 |
| chr_3 | g2653 | g2653.t3 | TSS | g2653.t3 | 19360781 | 19360781 |
Sequences
>g2653.t3 Gene=g2653 Length=317
ACTTATTGGTAAAACATAGTGGAAGTAGACGTCCATCGTCTCATCGAGAAGAAAAAATTA
CGCGCAGTAAAGAAGAAGCAAGAAAATTACTCGAAGGATATCGTGAACAAATTGAGAAAG
GTGAAGCTGAATTTGCAGAATTGGCATCAAAATACAGTGATTGTTCATCATATAAGAAAG
GCGGATCATTGGGACGTTTTAAGAGAGGTGTTATGCAGAAGCCATTTGAGGATGCAGCAT
TTAGTCTTAAAGTGAATGAAATGAGCGACATCGTCGATACTGATAGTGGATTACACATTA
TCCTACGAACTAAATAA
>g2653.t3 Gene=g2653 Length=34
MQKPFEDAAFSLKVNEMSDIVDTDSGLHIILRTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2653.t3 | Gene3D | G3DSA:3.10.50.40 | - | 1 | 34 | 0.0000000 |
| 2 | g2653.t3 | PANTHER | PTHR10657 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 33 | 0.0000000 |
| 3 | g2653.t3 | PANTHER | PTHR10657:SF4 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 1 | 33 | 0.0000000 |
| 1 | g2653.t3 | Pfam | PF13616 | PPIC-type PPIASE domain | 1 | 30 | 0.0000001 |
| 6 | g2653.t3 | ProSiteProfiles | PS50198 | PpiC-type peptidyl-prolyl cis-trans isomerase family profile. | 1 | 34 | 11.1560000 |
| 4 | g2653.t3 | SUPERFAMILY | SSF54534 | FKBP-like | 1 | 33 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
