General information for g2654.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2654 is located on chr_3: 19361490..19362574 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2654 | g2654.t4 | TSS | g2654.t4 | 19360809 | 19360809 |
| chr_3 | g2654 | g2654.t4 | isoform | g2654.t4 | 19361490 | 19362574 |
| chr_3 | g2654 | g2654.t4 | exon | g2654.t4.exon1 | 19361490 | 19362574 |
| chr_3 | g2654 | g2654.t4 | cds | g2654.t4.CDS1 | 19361537 | 19362484 |
| chr_3 | g2654 | g2654.t4 | TTS | g2654.t4 | 19363389 | 19363389 |
Sequences
>g2654.t4 Gene=g2654 Length=1085
GTTTCAATGAAGAAACTTGGCGCGCATATTGTGAGAGACAAAAGCGAATGCGAATTCATG
AATCTGGGATTGGTCTTGCAAGTTTAACAGCTGCACAGAATCCAGGAGGTAACATTAATC
AACAGCAAGGACCAACAAATGAAGGTAGTGGTGGAGGAAGACCATATATTAATATTGGAA
TGAATAAAGGAATGGGAAGAGGACCAAGACCACCGAGACCTGCTGGCACAATTGATGTTA
TTGGAGCACCTTCTCAAAATCCAATTCGACCAATGGCTCCACGAGAAAATGTTATTCAAG
TTATGACAGCTGATCGACGTGAATATTCTCGTACTGTTGTGAATCAAAATCCTCAAATGC
CAATGCAGTTCAATGTACCAGCAGAGGACTTTTATAATCACGAAGAGCAGGATGCATTCA
ATTATGGTTATGAACCAACTCAAGATGGAAATCAATGGGAAGGAAATTCAAATTGGGCGC
CAAGTGAAATTAAAGAATTAACTCCGATGAATCAACCACCACCAGGAATGCATAATGCAC
CAAATATGAATATTCCACCACCTATGATGCAAATGATGCCTCCACAAAATATGATTCCTC
CTCTTATGGGGCAAATGCCAATAGTAAAACAAGAACCAGAAGATAAACGCGACAATCGTC
GAATGGGACGAGATAACAGAGATTTTAGAGATGATAGAAGGCATGATGATAGAAAAAGAA
TGCGTGAACGTTCAAATTCAAGAGAAAGAGGCGATTTAAGAAAATCTGATCGACCTGATC
GACCCAGAGATGACCGGCCACGTTCTGATCGTGATAGATATCCTAGAGAGAGCAGCAGTC
GAAGCAGCAGACGTTCAAAATCTCGTGATCGAAGCAAAAGATCTAAAAGTCGCGATAGGA
AACGTTCTAGATCAAAGGACCACAAAAGCAGCGATGATAGAGGAAGTCGATCTGATAAAT
CAAAAAGAGAACGTTCAAAAAAGGAAGATGCATAAAAATCAAGATTACAAAAGCTTTTAT
CAGTTAATTTAATCAATTTAATTATGTATTGATTTTGAATAAATGATTCATTTGAGAATA
TTTCG
>g2654.t4 Gene=g2654 Length=315
MRIHESGIGLASLTAAQNPGGNINQQQGPTNEGSGGGRPYINIGMNKGMGRGPRPPRPAG
TIDVIGAPSQNPIRPMAPRENVIQVMTADRREYSRTVVNQNPQMPMQFNVPAEDFYNHEE
QDAFNYGYEPTQDGNQWEGNSNWAPSEIKELTPMNQPPPGMHNAPNMNIPPPMMQMMPPQ
NMIPPLMGQMPIVKQEPEDKRDNRRMGRDNRDFRDDRRHDDRKRMRERSNSRERGDLRKS
DRPDRPRDDRPRSDRDRYPRESSSRSSRRSKSRDRSKRSKSRDRKRSRSKDHKSSDDRGS
RSDKSKRERSKKEDA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2654.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 33 | - |
| 5 | g2654.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 38 | - |
| 3 | g2654.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 269 | - |
| 6 | g2654.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 315 | - |
| 4 | g2654.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 288 | - |
| 1 | g2654.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 315 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
