General information for g2655.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g2655 is located on chr_3: 19364297..19383354 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2655 | g2655.t4 | TSS | g2655.t4 | 19363007 | 19363007 |
| chr_3 | g2655 | g2655.t4 | isoform | g2655.t4 | 19363118 | 19364352 |
| chr_3 | g2655 | g2655.t4 | exon | g2655.t4.exon1 | 19363118 | 19364228 |
| chr_3 | g2655 | g2655.t4 | cds | g2655.t4.CDS1 | 19363118 | 19364228 |
| chr_3 | g2655 | g2655.t4 | exon | g2655.t4.exon2 | 19364297 | 19364352 |
| chr_3 | g2655 | g2655.t4 | cds | g2655.t4.CDS2 | 19364297 | 19364352 |
| chr_3 | g2655 | g2655.t4 | TTS | g2655.t4 | NA | NA |
Sequences
>g2655.t4 Gene=g2655 Length=1167
ATGGATAGTGCAGCGAGTTTTGATGACGATAACTCGGATAGTGATTATATGAACGTTTCC
TCATCATCTGAAAGTTCAGAAGAAAATGAATTTCCAGCAAAACGTAAGAACGTACCAATC
ACTAAACGCAGAGATGGACTCGATATTAGTAAAAATCCATTATCGATTATTAAATCGAGG
CTTAATATTAGGCAATCGACAAGTCAGGCGGCAGTTAAAATGTGTTTAAAGCGAAAATTC
TCTTTTACAAACGCAACGACTACAACAACAACAAAAAAGGAAAATGATGGTTCAGGCTCA
TCATCGTCCACCATTAACTTTCAACTCATTTCGGCTTCTTCGTCTTCGTCACAACCACAA
TCTCAATCTCAATCGCCAAATGATGAACAATCGATGGAGCTTGAGTCACCAAGTGGTAGT
GGCATTGGAAACAACCTTTCTACACTTATGCCTGCACCAATGCAGGGTAGCGATGATCCA
CCATATTTTCCTGAAAAATTTCCAAGTAAACTATGTGCCTTTTGTAACTTGGGTGAACGC
AGTCAGCTCGGACAGGGTGAAATGTTACGATTAGAACTGAGTGAAGAAGATTCGAAAAAT
GCATTAAAATTAAAATCGCAACAATCACCACAGGAAGACGAATCGAAAAATGGTAGTGAT
GATTTAAGTAAATTGTTAAAAAATGCTTCATCGTCTACATTATTACAACAACAATTAAAT
CGTCGTCAAAAAGGCTTAAACAAGTGCAAGAATCCCGTTGCAACAAACGAATATGTTGAT
GAATTGGAAAAAATTGGCTATACGGAAGCCATGGATTTGAGTCTGATTGTTGAAAATGGC
TACTATTATGTTCATCGTGCGTGTGCAATGTGGTCATTTGGTGTTGATCGAGATCCAATT
AATGAGGCATTAAGTAATGTGTCAACTGTACTGAAACAAAGTTTGAATCGTAAATGTACA
CATTGCAATCATTATGGCGCGAGTGCAGTTTGCAAAATAAATTGTCAAAAGTTTTTCCAT
TTTCCATGCATCGCTGCATCAGGGAGTTTTGAAGATTTTCAATCGTGTTCAGTGTACTGT
TTCGATCATTTGTCACAAGTTGCTGTAAATTGTGGTGAAGAGGCCTACTGTCGAGCATGT
TGTAATTTGGGTGATATAAGCAATCTC
>g2655.t4 Gene=g2655 Length=389
MDSAASFDDDNSDSDYMNVSSSSESSEENEFPAKRKNVPITKRRDGLDISKNPLSIIKSR
LNIRQSTSQAAVKMCLKRKFSFTNATTTTTTKKENDGSGSSSSTINFQLISASSSSSQPQ
SQSQSPNDEQSMELESPSGSGIGNNLSTLMPAPMQGSDDPPYFPEKFPSKLCAFCNLGER
SQLGQGEMLRLELSEEDSKNALKLKSQQSPQEDESKNGSDDLSKLLKNASSSTLLQQQLN
RRQKGLNKCKNPVATNEYVDELEKIGYTEAMDLSLIVENGYYYVHRACAMWSFGVDRDPI
NEALSNVSTVLKQSLNRKCTHCNHYGASAVCKINCQKFFHFPCIAASGSFEDFQSCSVYC
FDHLSQVAVNCGEEAYCRACCNLGDISNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2655.t4 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 262 | 366 | 1.3E-13 |
| 6 | g2655.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - |
| 5 | g2655.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 27 | - |
| 3 | g2655.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 49 | - |
| 4 | g2655.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 138 | - |
| 1 | g2655.t4 | PANTHER | PTHR45888:SF3 | HL01030P-RELATED | 174 | 388 | 9.2E-34 |
| 2 | g2655.t4 | PANTHER | PTHR45888 | - | 174 | 388 | 9.2E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed