Gene loci information

Transcript annotation

  • This transcript has been annotated as histone-arginine N-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2655 g2655.t5 isoform g2655.t5 19364297 19365331
chr_3 g2655 g2655.t5 exon g2655.t5.exon1 19364297 19365331
chr_3 g2655 g2655.t5 cds g2655.t5.CDS1 19364353 19365330
chr_3 g2655 g2655.t5 TSS g2655.t5 NA NA
chr_3 g2655 g2655.t5 TTS g2655.t5 NA NA

Sequences

>g2655.t5 Gene=g2655 Length=1035
GTGGTGAAGAGGCCTACTGTCGAGCATGTTGTAATTTGGGTGATATAAGCAATCTCATGG
TGTGTTCAAAATGTGGTGATCATTATCATGGAGCATGTGTTGGATTAGCACAACAACCTG
GTGTAAGAGCTGGCTGGCAGTGTAAGAATTGTCGTTCATGTCAGATTTGTCGCATTCCTG
ATAATAGCGATGGTCGAACATTAGCTTGTGAAACATGCGATAAACTTTATCATCCTCAAT
GTTTAAGACCAATTATGACAACTGTACCAAAGTACGGATGGAAGTGTCGTTGTTGTCGTA
TTTGCAGTGATTGCGGTGCACGAACGCCTGGAGCAGGAGCTTCTTCGCGATGGCATAATC
ATTTTACAGTTTGCGATTCATGCTATCAGCAACGTAATAAGGGATATTCTTGTCCAATTT
GTCGTAAAGCATATCGTGCTGCTGCTTATAGAGAAATGGTGAAATGTTCAATTTGTCAAA
AGTTTGTGCATAGTACATGTGACCCAGAGGCAGATTTAAACGCCTACGAACGAAGAAAGG
AAGTAAATCCGGACTATGAGTATACATGCGGAATGTGTAAAATTGCAACGCAAAATGAAC
GAGTTAATTTAGCGATGAGAAGAAGCAATAGTGGAGATGATGAAAGTCTTTCCGCATCAC
AAGAGAGTTTAGATGATATTGATATGGACATTGATGGAAGAATGGGAAGTAGAGAAGATT
TAGCACTTGGTTTGGGCAAAGGAAAACCAATGCTGGCAAGTAAAATAGCAAAGAAAAAAC
TGGGACTTAATAATACTGGTGGAATAAACAGCAATAATAGCGGTTTTGGACAAAGACCAA
AGGGTATTGGAAAATTGGGCTTCCAAAAACGTGCAAGAACTTTTGAGTTGGGACGAAAGC
GAGGTCCGAAATCGAAAATGCGTGGAATTTTTGGTGTTCCTGGAATTGGCTTACAACGAC
CTGTTGCTGCTGATTCAAAACAAAGTGACGAAGAACCAGGATCAGAAAATCGTCTTGTTC
TTTGTTCAGCAAAAG

>g2655.t5 Gene=g2655 Length=326
MVCSKCGDHYHGACVGLAQQPGVRAGWQCKNCRSCQICRIPDNSDGRTLACETCDKLYHP
QCLRPIMTTVPKYGWKCRCCRICSDCGARTPGAGASSRWHNHFTVCDSCYQQRNKGYSCP
ICRKAYRAAAYREMVKCSICQKFVHSTCDPEADLNAYERRKEVNPDYEYTCGMCKIATQN
ERVNLAMRRSNSGDDESLSASQESLDDIDMDIDGRMGSREDLALGLGKGKPMLASKIAKK
KLGLNNTGGINSNNSGFGQRPKGIGKLGFQKRARTFELGRKRGPKSKMRGIFGVPGIGLQ
RPVAADSKQSDEEPGSENRLVLCSAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2655.t5 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 1 33 2.3E-6
8 g2655.t5 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 34 82 1.2E-11
9 g2655.t5 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 112 177 1.1E-11
15 g2655.t5 MobiDBLite mobidb-lite consensus disorder prediction 302 326 -
2 g2655.t5 PANTHER PTHR45888:SF3 HL01030P-RELATED 1 326 5.6E-74
3 g2655.t5 PANTHER PTHR45888 - 1 326 5.6E-74
1 g2655.t5 Pfam PF00628 PHD-finger 35 82 2.1E-7
11 g2655.t5 ProSitePatterns PS01359 Zinc finger PHD-type signature. 3 80 -
10 g2655.t5 ProSitePatterns PS01359 Zinc finger PHD-type signature. 106 174 -
16 g2655.t5 ProSiteProfiles PS50016 Zinc finger PHD-type profile. 32 83 9.543
14 g2655.t5 SMART SM00249 PHD_3 1 33 0.95
12 g2655.t5 SMART SM00249 PHD_3 34 81 1.5E-7
13 g2655.t5 SMART SM00249 PHD_3 118 175 2.4E-5
6 g2655.t5 SUPERFAMILY SSF57903 FYVE/PHD zinc finger 2 34 8.16E-6
5 g2655.t5 SUPERFAMILY SSF57903 FYVE/PHD zinc finger 25 88 3.7E-13
4 g2655.t5 SUPERFAMILY SSF57903 FYVE/PHD zinc finger 114 177 1.36E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed