General information for g2662.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Segment polarity protein dishevelled.
Parent gene
- The parent gene g2662 is located on chr_3: 19449635..19450466 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2662 | g2662.t2 | isoform | g2662.t2 | 19448917 | 19450466 |
| chr_3 | g2662 | g2662.t2 | exon | g2662.t2.exon1 | 19448917 | 19449224 |
| chr_3 | g2662 | g2662.t2 | cds | g2662.t2.CDS1 | 19448919 | 19449224 |
| chr_3 | g2662 | g2662.t2 | TTS | g2662.t2 | 19448924 | 19448924 |
| chr_3 | g2662 | g2662.t2 | exon | g2662.t2.exon2 | 19449406 | 19449475 |
| chr_3 | g2662 | g2662.t2 | cds | g2662.t2.CDS2 | 19449406 | 19449475 |
| chr_3 | g2662 | g2662.t2 | exon | g2662.t2.exon3 | 19449625 | 19449936 |
| chr_3 | g2662 | g2662.t2 | cds | g2662.t2.CDS3 | 19449625 | 19449830 |
| chr_3 | g2662 | g2662.t2 | exon | g2662.t2.exon4 | 19450083 | 19450165 |
| chr_3 | g2662 | g2662.t2 | exon | g2662.t2.exon5 | 19450236 | 19450466 |
| chr_3 | g2662 | g2662.t2 | TSS | g2662.t2 | 19450468 | 19450468 |
Sequences
>g2662.t2 Gene=g2662 Length=1004
AATGGAGAAAACTCTTCGTATAAAGTCTGTATAGAAAAATTTTATAACATTAAAAATTGC
ATTTTTGAGTGTCTAAATAGCAAATTTGCTACTTTAGTTGATAAAATTTTGCAAGTAAAA
TGTAAAGCTAACAATAATGAACAAAAAGAAGGCAGTTTTAACTAAATAGTAGATACAAAT
ATAATTTTTTTTCGGGAAAGAGGAAGTCAAATGAAAAAAAAGTATTCTTAGAAAGTAAAA
GGTTTTTATAACTCGAAAAAGATTGAAGTACACACACAGGGATTTCCAATAGATTACTTA
TTTTGAAAAAAAAAAACTCTAATTACTGACGAGAAAAATTTGCATCAATCATAATTGATT
TGTGAGTAAACACCCTTAAACACAACAACGACGACAACAACACATACATTTAAAAGAAAT
ATGGCAGAAGATGACGATAATAATCAAGTGTATCATCAAAAGGAGACAAAAATCATTTAT
CACATCGATGAAGAGACAACACCATACTTGGTTAAAATTCCACTTCCACCATCTCAAGTG
AAATTGAGAGATTTTAAAATAATCTTGAGCAAGCAACAAACGTGCAATTATAAATTCTTC
TTTAAGTCTATGGATGCTGATTTTGGAGTCGTGAAAGAAGAAATAATTGATGATAATACA
GTTCTTCCATGTTTCAATAATAAAGTTGTTTGTTGGTTGGTAACAGCAACAGATACAACA
TCTAACGCATCAGAAAATCAACATACCACTGATGGTGTTGAGCACAAAGTGCGACATGGA
CCAGATGGAAAGCTTACGTATCAGGCTGTTACTAATTTCCTCTCATCGTCATCTGATCTG
GCTTCTTCGACCTCCTTCTTTGACGATGATGAAACTGAAAATGATATGGATAAAATGAAG
CATGAAAATTATTATGATTTTGATGAAAATTTAACGGAATATTCGTCAATACTATCAAGT
CAGCAGAACAATCGATTGAGAATTAGAAAGAAACCACAAAAAAG
>g2662.t2 Gene=g2662 Length=194
MAEDDDNNQVYHQKETKIIYHIDEETTPYLVKIPLPPSQVKLRDFKIILSKQQTCNYKFF
FKSMDADFGVVKEEIIDDNTVLPCFNNKVVCWLVTATDTTSNASENQHTTDGVEHKVRHG
PDGKLTYQAVTNFLSSSSDLASSTSFFDDDETENDMDKMKHENYYDFDENLTEYSSILSS
QQNNRLRIRKKPQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2662.t2 | Gene3D | G3DSA:3.10.20.380 | - | 12 | 96 | 0.000 |
| 2 | g2662.t2 | PANTHER | PTHR10878:SF6 | SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-3 | 15 | 112 | 0.000 |
| 3 | g2662.t2 | PANTHER | PTHR10878 | SEGMENT POLARITY PROTEIN DISHEVELLED | 15 | 112 | 0.000 |
| 1 | g2662.t2 | Pfam | PF00778 | DIX domain | 15 | 94 | 0.000 |
| 7 | g2662.t2 | ProSiteProfiles | PS50841 | DIX domain profile. | 13 | 97 | 25.569 |
| 5 | g2662.t2 | SMART | SM00021 | dax_2 | 13 | 97 | 0.000 |
| 4 | g2662.t2 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 14 | 95 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016055 | Wnt signaling pathway | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
