Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t14 TTS g2663.t14 19450762 19450762
chr_3 g2663 g2663.t14 isoform g2663.t14 19450968 19452370
chr_3 g2663 g2663.t14 exon g2663.t14.exon1 19450968 19451438
chr_3 g2663 g2663.t14 exon g2663.t14.exon2 19451516 19451584
chr_3 g2663 g2663.t14 cds g2663.t14.CDS1 19451524 19451584
chr_3 g2663 g2663.t14 exon g2663.t14.exon3 19451785 19451966
chr_3 g2663 g2663.t14 cds g2663.t14.CDS2 19451785 19451966
chr_3 g2663 g2663.t14 exon g2663.t14.exon4 19452025 19452185
chr_3 g2663 g2663.t14 cds g2663.t14.CDS3 19452025 19452183
chr_3 g2663 g2663.t14 exon g2663.t14.exon5 19452244 19452370
chr_3 g2663 g2663.t14 TSS g2663.t14 NA NA

Sequences

>g2663.t14 Gene=g2663 Length=1010
ACTAACGCTACATCAGCAAAAACATGGTTCTTGGATGTTGCTAAAGATCCAAGTGCAGTA
GCCAAGCATTTCGTTGCATTATCAACAAATGAAGAAAAAGCAACAGCATTTGGAATTGAC
GCAAAAAATATGTTTGCATTCTGGGACTTTGTTGGTGGTCGTTATAGCTTGTGGTCTGCT
ATTGGCTTATCAATTTCGCTCTCTATTGGCTTTGAAAATTTTGTTAAACTTCAAGAAGGA
GCATTCTTTATTGATCAACACTTTCAAACAGCTCCATTAGAACAAAATGCACCAGTCATT
CTTGCATTATTGGGTATTTGGTATTCTAACTTTTATGGCGCAGAGACAACAGCTCTTTTA
CCATATGATCAATATTTGCATCGTTTTGCTGCCTACTTCCAGCAAGGTGATATGGAAAGT
AATGGTAAAGGTGTTACAAAGAGCGGCAAGCATGTTGATTACAACACTGGACTTTTTGAA
AACTTTAGGGCGAGCCAGGAACAAATGGACAACATGCATTCTATCAATTGATCCATCAGG
GAACTCGTTTGATTCCATGTGACTTTATTGCTCCTGCTCAAACTCAAAATCCTATTGCTG
GAGGTATTCATCATAAATTGATTCTTGCCAACTTTTTGGCACAAACTGAGGCTCTCATGT
GCGGTAAGACCGAACAACAAGTCAGAGCTGAATTGGAAAAAGCTGGTATGAAAGGAGAAA
AATTAGAGAATCTTGTTCCACATAAAATCTTTACTGGAAATCGCCCAACTAACTCAATTG
TTGTGAAGAAAGTTACACCATTCACTCTTGGTGCTCTCATTGCAATGTATGAGCACAAAA
TCTTCACACAAGGCATCATTTGGGACGTTAATTCATTTGATCAATGGGGTGTTGAACTTG
GAAAAGCATTGGCAAAGGCAATTGAAGGTGATTTGGCAAACAATGACAAAGTTTCAAGTC
ATGATGCATCAACAAACGGCTTGATTAATTTTATCAAATCTAGCTGGTAA

>g2663.t14 Gene=g2663 Length=133
MFAFWDFVGGRYSLWSAIGLSISLSIGFENFVKLQEGAFFIDQHFQTAPLEQNAPVILAL
LGIWYSNFYGAETTALLPYDQYLHRFAAYFQQGDMESNGKGVTKSGKHVDYNTGLFENFR
ASQEQMDNMHSIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2663.t14 Gene3D G3DSA:3.40.50.10490 - 1 30 3.1E-10
8 g2663.t14 Gene3D G3DSA:3.40.50.10490 - 31 118 6.1E-37
2 g2663.t14 PANTHER PTHR11469:SF5 GLUCOSE-6-PHOSPHATE ISOMERASE 1 114 3.3E-56
3 g2663.t14 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 1 114 3.3E-56
4 g2663.t14 PRINTS PR00662 Glucose-6-phosphate isomerase signature 2 20 1.2E-18
5 g2663.t14 PRINTS PR00662 Glucose-6-phosphate isomerase signature 79 100 1.2E-18
1 g2663.t14 Pfam PF00342 Phosphoglucose isomerase 1 115 1.0E-56
10 g2663.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
11 g2663.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 32 -
9 g2663.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 33 133 -
12 g2663.t14 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 6 19 -
13 g2663.t14 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 1 114 34.735
6 g2663.t14 SUPERFAMILY SSF53697 SIS domain 1 116 2.26E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values