General information for g2663.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glucose-6-phosphate isomerase.
Parent gene
- The parent gene g2663 is located on chr_3: 19453861..19455290 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2663 | g2663.t22 | TTS | g2663.t22 | 19450762 | 19450762 |
| chr_3 | g2663 | g2663.t22 | isoform | g2663.t22 | 19450968 | 19452953 |
| chr_3 | g2663 | g2663.t22 | exon | g2663.t22.exon1 | 19450968 | 19451438 |
| chr_3 | g2663 | g2663.t22 | exon | g2663.t22.exon2 | 19451516 | 19451566 |
| chr_3 | g2663 | g2663.t22 | cds | g2663.t22.CDS1 | 19451524 | 19451566 |
| chr_3 | g2663 | g2663.t22 | exon | g2663.t22.exon3 | 19451785 | 19451966 |
| chr_3 | g2663 | g2663.t22 | cds | g2663.t22.CDS2 | 19451785 | 19451966 |
| chr_3 | g2663 | g2663.t22 | exon | g2663.t22.exon4 | 19452025 | 19452185 |
| chr_3 | g2663 | g2663.t22 | cds | g2663.t22.CDS3 | 19452025 | 19452185 |
| chr_3 | g2663 | g2663.t22 | exon | g2663.t22.exon5 | 19452244 | 19452865 |
| chr_3 | g2663 | g2663.t22 | cds | g2663.t22.CDS4 | 19452244 | 19452775 |
| chr_3 | g2663 | g2663.t22 | exon | g2663.t22.exon6 | 19452950 | 19452953 |
| chr_3 | g2663 | g2663.t22 | TSS | g2663.t22 | 19453774 | 19453774 |
Sequences
>g2663.t22 Gene=g2663 Length=1491
GCTGGATTACTCGAAAAATCGTATTACTGATGACGTGTGGAAGCTGTTGTTGCAACTTGC
TGAGTCTCGTGGCTTGCAACAAGCTCGCACTCAAATGTTCAGTGGAGAACACATCAATAT
AACTGAAGACCGTGCTGTTTTGCATACGGCATTGCGTAATAAATCTGGCAAACCGGTTCT
TGTTGATGGCAAGGATGTTATGCCAGAAATTAATGCTGTGTTAGAGCACATGAAGGAATT
TACAAACCAAGTTGTTAGTGGTGAATGGAAAGGCTATACTGGAAAGAAAATTACTGACGT
GGTTAATATCGGTATTGGCGGAAGCGATCTCGGTCCTTTGATGGTCACTGAAGCTCTCAA
ACCTTATTCAACTGGTTTGAAAATGCATTTTGTATCAAATATTGATGGTACACATTTAGC
TGAAACACTTAAAAAGATTTCTGCCGAGACAACACTTTTTATTATTGCGTCAAAAACGTT
CACTACACAGGAAACAATTACTAACGCTACATCAGCAAAAACATGGTTCTTGGATGTTGC
TAAAGATCCAAGTGCAGTAGCCAAGCATTTCGTTGCATTATCAACAAATGAAGAAAAAGC
AACAGCATTTGGAATTGACGCAAAAAATATGTTTGCATTCTGGGACTTTGTTGGTGGTCG
TTATAGCTTGTGGTCTGCTATTGGCTTATCAATTTCGCTCTCTATTGGCTTTGAAAATTT
TGTTAAACTTCAAGAAGGAGCATTCTTTATTGATCAACACTTTCAAACAGCTCCATTAGA
ACAAAATGCACCAGTCATTCTTGCATTATTGGGTATTTGGTATTCTAACTTTTATGGCGC
AGAGACAACAGCTCTTTTACCATATGATCAATATTTGCATCGTTTTGCTGCCTACTTCCA
GCAAGGTGATATGGAAAGTAATGGTAAAGGTGTTACAAAGAGCGGCAAGCATGTTGATTA
CAACACTGGGGCGAGCCAGGAACAAATGGACAACATGCATTCTATCAATTGATCCATCAG
GGAACTCGTTTGATTCCATGTGACTTTATTGCTCCTGCTCAAACTCAAAATCCTATTGCT
GGAGGTATTCATCATAAATTGATTCTTGCCAACTTTTTGGCACAAACTGAGGCTCTCATG
TGCGGTAAGACCGAACAACAAGTCAGAGCTGAATTGGAAAAAGCTGGTATGAAAGGAGAA
AAATTAGAGAATCTTGTTCCACATAAAATCTTTACTGGAAATCGCCCAACTAACTCAATT
GTTGTGAAGAAAGTTACACCATTCACTCTTGGTGCTCTCATTGCAATGTATGAGCACAAA
ATCTTCACACAAGGCATCATTTGGGACGTTAATTCATTTGATCAATGGGGTGTTGAACTT
GGAAAAGCATTGGCAAAGGCAATTGAAGGTGATTTGGCAAACAATGACAAAGTTTCAAGT
CATGATGCATCAACAAACGGCTTGATTAATTTTATCAAATCTAGCTGGTAA
>g2663.t22 Gene=g2663 Length=305
MFSGEHINITEDRAVLHTALRNKSGKPVLVDGKDVMPEINAVLEHMKEFTNQVVSGEWKG
YTGKKITDVVNIGIGGSDLGPLMVTEALKPYSTGLKMHFVSNIDGTHLAETLKKISAETT
LFIIASKTFTTQETITNATSAKTWFLDVAKDPSAVAKHFVALSTNEEKATAFGIDAKNMF
AFWDFVGGRYSLWSAIGLSISLSIGFENFVKLQEGAFFIDQHFQTAPLEQNAPVILALLG
IWYSNFYGAETTALLPYDQYLHRFAAYFQQGDMESNGKGVTKSGKHVDYNTGASQEQMDN
MHSIN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2663.t22 | CDD | cd05015 | SIS_PGI_1 | 40 | 202 | 1.1793E-76 |
| 9 | g2663.t22 | Gene3D | G3DSA:3.40.50.10490 | - | 1 | 293 | 1.3E-140 |
| 8 | g2663.t22 | Gene3D | G3DSA:3.40.50.10490 | - | 17 | 210 | 1.3E-140 |
| 2 | g2663.t22 | PANTHER | PTHR11469:SF5 | GLUCOSE-6-PHOSPHATE ISOMERASE | 1 | 293 | 4.6E-153 |
| 3 | g2663.t22 | PANTHER | PTHR11469 | GLUCOSE-6-PHOSPHATE ISOMERASE | 1 | 293 | 4.6E-153 |
| 6 | g2663.t22 | PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 69 | 88 | 4.9E-32 |
| 5 | g2663.t22 | PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 180 | 198 | 4.9E-32 |
| 4 | g2663.t22 | PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 257 | 278 | 4.9E-32 |
| 1 | g2663.t22 | Pfam | PF00342 | Phosphoglucose isomerase | 1 | 293 | 9.5E-153 |
| 11 | g2663.t22 | ProSitePatterns | PS00765 | Phosphoglucose isomerase signature 1. | 184 | 197 | - |
| 12 | g2663.t22 | ProSiteProfiles | PS51463 | Glucose-6-phosphate isomerase family profile. | 1 | 305 | 86.343 |
| 7 | g2663.t22 | SUPERFAMILY | SSF53697 | SIS domain | 1 | 293 | 2.06E-124 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004347 | glucose-6-phosphate isomerase activity | MF |
| GO:0006094 | gluconeogenesis | BP |
| GO:0006096 | glycolytic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
