Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t28 TTS g2663.t28 19450762 19450762
chr_3 g2663 g2663.t28 isoform g2663.t28 19450968 19453861
chr_3 g2663 g2663.t28 exon g2663.t28.exon1 19450968 19451438
chr_3 g2663 g2663.t28 exon g2663.t28.exon2 19451516 19451570
chr_3 g2663 g2663.t28 exon g2663.t28.exon3 19451778 19451966
chr_3 g2663 g2663.t28 cds g2663.t28.CDS1 19451781 19451966
chr_3 g2663 g2663.t28 exon g2663.t28.exon4 19452025 19452185
chr_3 g2663 g2663.t28 cds g2663.t28.CDS2 19452025 19452185
chr_3 g2663 g2663.t28 exon g2663.t28.exon5 19452244 19452865
chr_3 g2663 g2663.t28 cds g2663.t28.CDS3 19452244 19452865
chr_3 g2663 g2663.t28 exon g2663.t28.exon6 19452950 19453133
chr_3 g2663 g2663.t28 cds g2663.t28.CDS4 19452950 19453117
chr_3 g2663 g2663.t28 exon g2663.t28.exon7 19453705 19453861
chr_3 g2663 g2663.t28 TSS g2663.t28 NA NA

Sequences

>g2663.t28 Gene=g2663 Length=1839
ATGTCTTATAATGTCGGTATAGAAGAGACTCTACTGACAGCAATGCTGTGGGCTTCTACA
CTATTGACTCCTTCATCTGTTGTACTCATTCGATAGCCGTTTTTTGAGCAAGGTAGTCGG
AGTAATTTTCTTGTATTTGCAGTGATAAATTTTTAAAGTCTATTAAACCGAAAATGTCGA
AGCCTCTTCTTACAACCGATCCTGTTTATCAAAAACTTCAACAATATTACAATGAAAACG
GGGCAAAAATAAACATCAAACAATTATTTGATAGTGATCCAAAACGTTTCGATAAGTTTA
GCTTGACTTTAAAAACACCAAATGACGGTGATATTTTGCTGGATTACTCGAAAAATCGTA
TTACTGATGACGTGTGGAAGCTGTTGTTGCAACTTGCTGAGTCTCGTGGCTTGCAACAAG
CTCGCACTCAAATGTTCAGTGGAGAACACATCAATATAACTGAAGACCGTGCTGTTTTGC
ATACGGCATTGCGTAATAAATCTGGCAAACCGGTTCTTGTTGATGGCAAGGATGTTATGC
CAGAAATTAATGCTGTGTTAGAGCACATGAAGGAATTTACAAACCAAGTTGTTAGTGGTG
AATGGAAAGGCTATACTGGAAAGAAAATTACTGACGTGGTTAATATCGGTATTGGCGGAA
GCGATCTCGGTCCTTTGATGGTCACTGAAGCTCTCAAACCTTATTCAACTGGTTTGAAAA
TGCATTTTGTATCAAATATTGATGGTACACATTTAGCTGAAACACTTAAAAAGATTTCTG
CCGAGACAACACTTTTTATTATTGCGTCAAAAACGTTCACTACACAGGAAACAATTACTA
ACGCTACATCAGCAAAAACATGGTTCTTGGATGTTGCTAAAGATCCAAGTGCAGTAGCCA
AGCATTTCGTTGCATTATCAACAAATGAAGAAAAAGCAACAGCATTTGGAATTGACGCAA
AAAATATGTTTGCATTCTGGGACTTTGTTGGTGGTCGTTATAGCTTGTGGTCTGCTATTG
GCTTATCAATTTCGCTCTCTATTGGCTTTGAAAATTTTGTTAAACTTCAAGAAGGAGCAT
TCTTTATTGATCAACACTTTCAAACAGCTCCATTAGAACAAAATGCACCAGTCATTCTTG
CATTATTGGGTATTTGGTATTCTAACTTTTATGGCGCAGAGACAACAGCTCTTTTACCAT
ATGATCAATATTTGCATCGTTTTGCTGCCTACTTCCAGCAAGGTGATATGGAAAGTAATG
GTAAAGGTGTTACAAAGAGCGGCAAGCATGTTGATTACAACACTGGGTAAGTTTTAGGGC
GAGCCAGGAACAAATGGACAACATGCATTCTATCAATTGATCCATCAGGGAACTCGTTTG
ATTCCATGTGACTTTATTGCTCCTGCTCAAACTCAAAATCCTATTGCTGGAGGTATTCAT
CATAAATTGATTCTTGCCAACTTTTTGGCACAAACTGAGGCTCTCATGTGCGGTAAGACC
GAACAACAAGTCAGAGCTGAATTGGAAAAAGCTGGTATGAAAGGAGAAAAATTAGAGAAT
CTTGTTCCACATAAAATCTTTACTGGAAATCGCCCAACTAACTCAATTGTTGTGAAGAAA
GTTACACCATTCACTCTTGGTGCTCTCATTGCAATGTATGAGCACAAAATCTTCACACAA
GGCATCATTTGGGACGTTAATTCATTTGATCAATGGGGTGTTGAACTTGGAAAAGCATTG
GCAAAGGCAATTGAAGGTGATTTGGCAAACAATGACAAAGTTTCAAGTCATGATGCATCA
ACAAACGGCTTGATTAATTTTATCAAATCTAGCTGGTAA

>g2663.t28 Gene=g2663 Length=378
MSKPLLTTDPVYQKLQQYYNENGAKINIKQLFDSDPKRFDKFSLTLKTPNDGDILLDYSK
NRITDDVWKLLLQLAESRGLQQARTQMFSGEHINITEDRAVLHTALRNKSGKPVLVDGKD
VMPEINAVLEHMKEFTNQVVSGEWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYSTG
LKMHFVSNIDGTHLAETLKKISAETTLFIIASKTFTTQETITNATSAKTWFLDVAKDPSA
VAKHFVALSTNEEKATAFGIDAKNMFAFWDFVGGRYSLWSAIGLSISLSIGFENFVKLQE
GAFFIDQHFQTAPLEQNAPVILALLGIWYSNFYGAETTALLPYDQYLHRFAAYFQQGDME
SNGKGVTKSGKHVDYNTG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g2663.t28 CDD cd05015 SIS_PGI_1 126 288 8.33163E-77
9 g2663.t28 Gene3D G3DSA:3.40.50.10490 - 5 106 3.2E-33
10 g2663.t28 Gene3D G3DSA:3.40.50.10490 - 107 294 3.6E-87
8 g2663.t28 Gene3D G3DSA:3.40.50.10490 - 295 378 1.4E-35
2 g2663.t28 PANTHER PTHR11469:SF3 GLUCOSE-6-PHOSPHATE ISOMERASE 6 378 1.8E-184
3 g2663.t28 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 6 378 1.8E-184
5 g2663.t28 PRINTS PR00662 Glucose-6-phosphate isomerase signature 155 174 8.4E-32
4 g2663.t28 PRINTS PR00662 Glucose-6-phosphate isomerase signature 266 284 8.4E-32
6 g2663.t28 PRINTS PR00662 Glucose-6-phosphate isomerase signature 343 364 8.4E-32
1 g2663.t28 Pfam PF00342 Phosphoglucose isomerase 57 378 8.2E-163
12 g2663.t28 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 270 283 -
13 g2663.t28 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 9 378 96.831
7 g2663.t28 SUPERFAMILY SSF53697 SIS domain 7 378 2.78E-144

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed