General information for g2663.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucose-6-phosphate isomerase.
Parent gene
- The parent gene g2663 is located on chr_3: 19453861..19455290 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2663 | g2663.t3 | isoform | g2663.t3 | 19450466 | 19452182 |
| chr_3 | g2663 | g2663.t3 | exon | g2663.t3.exon1 | 19450466 | 19450693 |
| chr_3 | g2663 | g2663.t3 | cds | g2663.t3.CDS1 | 19450693 | 19450693 |
| chr_3 | g2663 | g2663.t3 | exon | g2663.t3.exon2 | 19450972 | 19451438 |
| chr_3 | g2663 | g2663.t3 | cds | g2663.t3.CDS2 | 19450972 | 19451321 |
| chr_3 | g2663 | g2663.t3 | exon | g2663.t3.exon3 | 19451516 | 19451566 |
| chr_3 | g2663 | g2663.t3 | exon | g2663.t3.exon4 | 19451785 | 19451966 |
| chr_3 | g2663 | g2663.t3 | exon | g2663.t3.exon5 | 19452025 | 19452182 |
| chr_3 | g2663 | g2663.t3 | TSS | g2663.t3 | NA | NA |
| chr_3 | g2663 | g2663.t3 | TTS | g2663.t3 | NA | NA |
Sequences
>g2663.t3 Gene=g2663 Length=1086
TGTTTGCATTCTGGGACTTTGTTGGTGGTCGTTATAGCTTGTGGTCTGCTATTGGCTTAT
CAATTTCGCTCTCTATTGGCTTTGAAAATTTTGTTAAACTTCAAGAAGGAGCATTCTTTA
TTGATCAACACTTTCAAACAGCTCCATTAGAACAAAATGCACCAGTCATTCTTGCATTAT
TGGGTATTTGGTATTCTAACTTTTATGGCGCAGAGACAACAGCTCTTTTACCATATGATC
AATATTTGCATCGTTTTGCTGCCTACTTCCAGCAAGGTGATATGGAAAGTAATGGTAAAG
GTGTTACAAAGAGCGGCAAGCATGTTGATTACAACACTGGGGCGAGCCAGGAACAAATGG
ACAACATGCATTCTATCAATTGATCCATCAGGGAACTCGTTTGATTCCATGTGACTTTAT
TGCTCCTGCTCAAACTCAAAATCCTATTGCTGGAGGTATTCATCATAAATTGATTCTTGC
CAACTTTTTGGCACAAACTGAGGCTCTCATGTGCGGTAAGACCGAACAACAAGTCAGAGC
TGAATTGGAAAAAGCTGGTATGAAAGGAGAAAAATTAGAGAATCTTGTTCCACATAAAAT
CTTTACTGGAAATCGCCCAACTAACTCAATTGTTGTGAAGAAAGTTACACCATTCACTCT
TGGTGCTCTCATTGCAATGTATGAGCACAAAATCTTCACACAAGGCATCATTTGGGACGT
TAATTCATTTGATCAATGGGGTGTTGAACTTGGAAAAGCATTGGCAAAGGCAATTGAAGG
TGATTTGGCAAACAATGACAAAGTTTCAAGTCATGATGCATCAACAAACGGCTTGATTAA
TTTTATCAAATCTAGCTGACGAATTCATATGAATGAGATGAGGGGCTAGGCATGATAAAG
TATTTAATATTGTTTTCATATTTTTATCTTATTTAATTTGATTTTTTAATGAATAATATA
AAATTGATAAAATATTAATTTGTATTTTTTCAATAAATATTAAGATATTCTTATTTATTT
GATAGACTAAAGTTAATATTTGATTGTCGGCTAAATGTCATGTGACATGATTTACGTATA
GTCGTA
>g2663.t3 Gene=g2663 Length=116
MCGKTEQQVRAELEKAGMKGEKLENLVPHKIFTGNRPTNSIVVKKVTPFTLGALIAMYEH
KIFTQGIIWDVNSFDQWGVELGKALAKAIEGDLANNDKVSSHDASTNGLINFIKSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2663.t3 | CDD | cd05016 | SIS_PGI_2 | 32 | 89 | 9.78742E-35 |
| 8 | g2663.t3 | Gene3D | G3DSA:3.40.50.10490 | - | 1 | 75 | 1.2E-34 |
| 9 | g2663.t3 | Gene3D | G3DSA:1.10.1390.10 | - | 76 | 116 | 2.1E-20 |
| 2 | g2663.t3 | PANTHER | PTHR11469:SF3 | GLUCOSE-6-PHOSPHATE ISOMERASE | 1 | 115 | 1.4E-47 |
| 3 | g2663.t3 | PANTHER | PTHR11469 | GLUCOSE-6-PHOSPHATE ISOMERASE | 1 | 115 | 1.4E-47 |
| 6 | g2663.t3 | PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 34 | 52 | 6.2E-22 |
| 5 | g2663.t3 | PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 52 | 66 | 6.2E-22 |
| 4 | g2663.t3 | PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 66 | 79 | 6.2E-22 |
| 1 | g2663.t3 | Pfam | PF00342 | Phosphoglucose isomerase | 1 | 110 | 4.7E-47 |
| 11 | g2663.t3 | ProSitePatterns | PS00174 | Phosphoglucose isomerase signature 2. | 66 | 83 | - |
| 12 | g2663.t3 | ProSiteProfiles | PS51463 | Glucose-6-phosphate isomerase family profile. | 1 | 116 | 30.547 |
| 7 | g2663.t3 | SUPERFAMILY | SSF53697 | SIS domain | 1 | 114 | 5.4E-43 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004347 | glucose-6-phosphate isomerase activity | MF |
| GO:0006094 | gluconeogenesis | BP |
| GO:0006096 | glycolytic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed