Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t4 isoform g2663.t4 19450466 19453861
chr_3 g2663 g2663.t4 exon g2663.t4.exon1 19450466 19451475
chr_3 g2663 g2663.t4 cds g2663.t4.CDS1 19451463 19451475
chr_3 g2663 g2663.t4 exon g2663.t4.exon2 19451785 19451966
chr_3 g2663 g2663.t4 cds g2663.t4.CDS2 19451785 19451966
chr_3 g2663 g2663.t4 exon g2663.t4.exon3 19452025 19452185
chr_3 g2663 g2663.t4 cds g2663.t4.CDS3 19452025 19452185
chr_3 g2663 g2663.t4 exon g2663.t4.exon4 19452244 19452865
chr_3 g2663 g2663.t4 cds g2663.t4.CDS4 19452244 19452865
chr_3 g2663 g2663.t4 exon g2663.t4.exon5 19452950 19453133
chr_3 g2663 g2663.t4 cds g2663.t4.CDS5 19452950 19453117
chr_3 g2663 g2663.t4 exon g2663.t4.exon6 19453721 19453861
chr_3 g2663 g2663.t4 TSS g2663.t4 NA NA
chr_3 g2663 g2663.t4 TTS g2663.t4 NA NA

Sequences

>g2663.t4 Gene=g2663 Length=2300
ATGTCTTATAATGTCGGTATAGAAGAGACTCTACTGACAGCAATGCTGTGGGCTTCTACA
CTATTGACTCCTTCATCTGTTGTACTCATTCGATAGCCGTTTTTTGAGCAAGGTAGTCGG
AGTAATTTTCTTGTATTTGCAGTCTATTAAACCGAAAATGTCGAAGCCTCTTCTTACAAC
CGATCCTGTTTATCAAAAACTTCAACAATATTACAATGAAAACGGGGCAAAAATAAACAT
CAAACAATTATTTGATAGTGATCCAAAACGTTTCGATAAGTTTAGCTTGACTTTAAAAAC
ACCAAATGACGGTGATATTTTGCTGGATTACTCGAAAAATCGTATTACTGATGACGTGTG
GAAGCTGTTGTTGCAACTTGCTGAGTCTCGTGGCTTGCAACAAGCTCGCACTCAAATGTT
CAGTGGAGAACACATCAATATAACTGAAGACCGTGCTGTTTTGCATACGGCATTGCGTAA
TAAATCTGGCAAACCGGTTCTTGTTGATGGCAAGGATGTTATGCCAGAAATTAATGCTGT
GTTAGAGCACATGAAGGAATTTACAAACCAAGTTGTTAGTGGTGAATGGAAAGGCTATAC
TGGAAAGAAAATTACTGACGTGGTTAATATCGGTATTGGCGGAAGCGATCTCGGTCCTTT
GATGGTCACTGAAGCTCTCAAACCTTATTCAACTGGTTTGAAAATGCATTTTGTATCAAA
TATTGATGGTACACATTTAGCTGAAACACTTAAAAAGATTTCTGCCGAGACAACACTTTT
TATTATTGCGTCAAAAACGTTCACTACACAGGAAACAATTACTAACGCTACATCAGCAAA
AACATGGTTCTTGGATGTTGCTAAAGATCCAAGTGCAGTAGCCAAGCATTTCGTTGCATT
ATCAACAAATGAAGAAAAAGCAACAGCATTTGGAATTGACGCAAAAAATATGTTTGCATT
CTGGGACTTTGTTGGTGGTCGTTATAGCTTGTGGTCTGCTATTGGCTTATCAATTTCGCT
CTCTATTGGCTTTGAAAATTTTGTTAAACTTCAAGAAGGAGCATTCTTTATTGATCAACA
CTTTCAAACAGCTCCATTAGAACAAAATGCACCAGTCATTCTTGCATTATTGGGTATTTG
GTATTCTAACTTTTATGGCGCAGAGACAACAGCTCTTTTACCATATGATCAATATTTGCA
TCGTTTTGCTGCCTACTTCCAGCAAGGTGATATGGAAAGTAATGGTAAAGGTGTTACAAA
GAGCGGCAAGCATGTTGATTACAACACTGGAAATTTAAATTAAACGTGACCTTTCAACTC
ATTATAGGGAACTCGTTTGATTCCATGTGACTTTATTGCTCCTGCTCAAACTCAAAATCC
TATTGCTGGAGGTATTCATCATAAATTGATTCTTGCCAACTTTTTGGCACAAACTGAGGC
TCTCATGTGCGGTAAGACCGAACAACAAGTCAGAGCTGAATTGGAAAAAGCTGGTATGAA
AGGAGAAAAATTAGAGAATCTTGTTCCACATAAAATCTTTACTGGAAATCGCCCAACTAA
CTCAATTGTTGTGAAGAAAGTTACACCATTCACTCTTGGTGCTCTCATTGCAATGTATGA
GCACAAAATCTTCACACAAGGCATCATTTGGGACGTTAATTCATTTGATCAATGGGGTGT
TGAACTTGGAAAAGCATTGGCAAAGGCAATTGAAGGTGATTTGGCAAACAATGACAAAGT
TTCAAGTCATGATGCATCAACAAACGGCTTGATTAATTTTATCAAATCTAGCTGGTAAAA
ATCTCACTCATCATGCACTTTAGTAATTATACATATTGATTACACAGACAGATTCCTTAT
TATTTTCATTATTATATGCTTGCTACCATACTTAACATCTAAACGTTAAACGTTAGAAAA
ATGTTATTCCATTTATTTGGAAAAGAATAAATCGAAAAAAGTTAATAAAATTGCTGATTT
CATGTAGAAATTTAGATTATAAACAAAGTTATCAATGTGTATCCTTGAACGTACTCAATG
CTTATACAACTTTAACTTTATTGTTGTTTTAGACGAATTCATATGAATGAGATGAGGGGC
TAGGCATGATAAAGTATTTAATATTGTTTTCATATTTTTATCTTATTTAATTTGATTTTT
TAATGAATAATATAAAATTGATAAAATATTAATTTGTATTTTTTCAATAAATATTAAGAT
ATTCTTATTTATTTGATAGACTAAAGTTAATATTTGATTGTCGGCTAAATGTCATGTGAC
ATGATTTACGTATAGTCGTA

>g2663.t4 Gene=g2663 Length=381
MSKPLLTTDPVYQKLQQYYNENGAKINIKQLFDSDPKRFDKFSLTLKTPNDGDILLDYSK
NRITDDVWKLLLQLAESRGLQQARTQMFSGEHINITEDRAVLHTALRNKSGKPVLVDGKD
VMPEINAVLEHMKEFTNQVVSGEWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYSTG
LKMHFVSNIDGTHLAETLKKISAETTLFIIASKTFTTQETITNATSAKTWFLDVAKDPSA
VAKHFVALSTNEEKATAFGIDAKNMFAFWDFVGGRYSLWSAIGLSISLSIGFENFVKLQE
GAFFIDQHFQTAPLEQNAPVILALLGIWYSNFYGAETTALLPYDQYLHRFAAYFQQGDME
SNGKGVTKSGKHVDYNTGNLN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g2663.t4 CDD cd05015 SIS_PGI_1 126 288 7.93865E-77
9 g2663.t4 Gene3D G3DSA:3.40.50.10490 - 5 106 3.2E-33
10 g2663.t4 Gene3D G3DSA:3.40.50.10490 - 107 294 3.7E-87
8 g2663.t4 Gene3D G3DSA:3.40.50.10490 - 295 381 5.1E-36
2 g2663.t4 PANTHER PTHR11469:SF3 GLUCOSE-6-PHOSPHATE ISOMERASE 6 379 7.0E-185
3 g2663.t4 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 6 379 7.0E-185
5 g2663.t4 PRINTS PR00662 Glucose-6-phosphate isomerase signature 155 174 8.6E-32
4 g2663.t4 PRINTS PR00662 Glucose-6-phosphate isomerase signature 266 284 8.6E-32
6 g2663.t4 PRINTS PR00662 Glucose-6-phosphate isomerase signature 343 364 8.6E-32
1 g2663.t4 Pfam PF00342 Phosphoglucose isomerase 57 380 2.3E-163
12 g2663.t4 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 270 283 -
13 g2663.t4 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 9 381 96.022
7 g2663.t4 SUPERFAMILY SSF53697 SIS domain 7 379 1.28E-144

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values