Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t43 TTS g2663.t43 19450762 19450762
chr_3 g2663 g2663.t43 isoform g2663.t43 19451785 19452763
chr_3 g2663 g2663.t43 exon g2663.t43.exon1 19451785 19451966
chr_3 g2663 g2663.t43 cds g2663.t43.CDS1 19451787 19451966
chr_3 g2663 g2663.t43 exon g2663.t43.exon2 19452025 19452185
chr_3 g2663 g2663.t43 cds g2663.t43.CDS2 19452025 19452185
chr_3 g2663 g2663.t43 exon g2663.t43.exon3 19452244 19452763
chr_3 g2663 g2663.t43 cds g2663.t43.CDS3 19452244 19452670
chr_3 g2663 g2663.t43 TSS g2663.t43 19453774 19453774

Sequences

>g2663.t43 Gene=g2663 Length=863
GAACACATCAATATAACTGAAGACCGTGCTGTTTTGCATACGGCATTGCGTAATAAATCT
GGCAAACCGGTTCTTGTTGATGGCAAGGATGTTATGCCAGAAATTAATGCTGTGTTAGAG
CACATGAAGGAATTTACAAACCAAGTTGTTAGTGGTGAATGGAAAGGCTATACTGGAAAG
AAAATTACTGACGTGGTTAATATCGGTATTGGCGGAAGCGATCTCGGTCCTTTGATGGTC
ACTGAAGCTCTCAAACCTTATTCAACTGGTTTGAAAATGCATTTTGTATCAAATATTGAT
GGTACACATTTAGCTGAAACACTTAAAAAGATTTCTGCCGAGACAACACTTTTTATTATT
GCGTCAAAAACGTTCACTACACAGGAAACAATTACTAACGCTACATCAGCAAAAACATGG
TTCTTGGATGTTGCTAAAGATCCAAGTGCAGTAGCCAAGCATTTCGTTGCATTATCAACA
AATGAAGAAAAAGCAACAGCATTTGGAATTGACGCAAAAAATATGTTTGCATTCTGGGAC
TTTGTTGGTGGTCGTTATAGCTTGTGGTCTGCTATTGGCTTATCAATTTCGCTCTCTATT
GGCTTTGAAAATTTTGTTAAACTTCAAGAAGGAGCATTCTTTATTGATCAACACTTTCAA
ACAGCTCCATTAGAACAAAATGCACCAGTCATTCTTGCATTATTGGGTATTTGGTATTCT
AACTTTTATGGCGCAGAGACAACAGCTCTTTTACCATATGATCAATATTTGCATCGTTTT
GCTGCCTACTTCCAGCAAGGTGATATGGAAAGTAATGGTAAAGGTGTTACAAAGAGCGGC
AAGCATGTTGATTACAACACTGG

>g2663.t43 Gene=g2663 Length=256
MPEINAVLEHMKEFTNQVVSGEWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYSTGL
KMHFVSNIDGTHLAETLKKISAETTLFIIASKTFTTQETITNATSAKTWFLDVAKDPSAV
AKHFVALSTNEEKATAFGIDAKNMFAFWDFVGGRYSLWSAIGLSISLSIGFENFVKLQEG
AFFIDQHFQTAPLEQNAPVILALLGIWYSNFYGAETTALLPYDQYLHRFAAYFQQGDMES
NGKGVTKSGKHVDYNT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2663.t43 CDD cd05015 SIS_PGI_1 5 167 6.42042E-77
9 g2663.t43 Gene3D G3DSA:3.40.50.10490 - 1 173 2.3E-79
8 g2663.t43 Gene3D G3DSA:3.40.50.10490 - 174 256 2.3E-35
2 g2663.t43 PANTHER PTHR11469:SF3 GLUCOSE-6-PHOSPHATE ISOMERASE 1 256 8.5E-132
3 g2663.t43 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 1 256 8.5E-132
5 g2663.t43 PRINTS PR00662 Glucose-6-phosphate isomerase signature 34 53 3.2E-32
6 g2663.t43 PRINTS PR00662 Glucose-6-phosphate isomerase signature 145 163 3.2E-32
4 g2663.t43 PRINTS PR00662 Glucose-6-phosphate isomerase signature 222 243 3.2E-32
1 g2663.t43 Pfam PF00342 Phosphoglucose isomerase 1 256 5.6E-132
11 g2663.t43 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 149 162 -
12 g2663.t43 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 1 256 77.191
7 g2663.t43 SUPERFAMILY SSF53697 SIS domain 1 256 1.5E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values