Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t49 isoform g2663.t49 19452091 19453133
chr_3 g2663 g2663.t49 exon g2663.t49.exon1 19452091 19452185
chr_3 g2663 g2663.t49 cds g2663.t49.CDS1 19452091 19452185
chr_3 g2663 g2663.t49 exon g2663.t49.exon2 19452244 19452865
chr_3 g2663 g2663.t49 cds g2663.t49.CDS2 19452244 19452865
chr_3 g2663 g2663.t49 exon g2663.t49.exon3 19452950 19453133
chr_3 g2663 g2663.t49 cds g2663.t49.CDS3 19452950 19453117
chr_3 g2663 g2663.t49 TSS g2663.t49 19453774 19453774
chr_3 g2663 g2663.t49 TTS g2663.t49 NA NA

Sequences

>g2663.t49 Gene=g2663 Length=901
GTCTATTAAACCGAAAATGTCGAAGCCTCTTCTTACAACCGATCCTGTTTATCAAAAACT
TCAACAATATTACAATGAAAACGGGGCAAAAATAAACATCAAACAATTATTTGATAGTGA
TCCAAAACGTTTCGATAAGTTTAGCTTGACTTTAAAAACACCAAATGACGGTGATATTTT
GCTGGATTACTCGAAAAATCGTATTACTGATGACGTGTGGAAGCTGTTGTTGCAACTTGC
TGAGTCTCGTGGCTTGCAACAAGCTCGCACTCAAATGTTCAGTGGAGAACACATCAATAT
AACTGAAGACCGTGCTGTTTTGCATACGGCATTGCGTAATAAATCTGGCAAACCGGTTCT
TGTTGATGGCAAGGATGTTATGCCAGAAATTAATGCTGTGTTAGAGCACATGAAGGAATT
TACAAACCAAGTTGTTAGTGGTGAATGGAAAGGCTATACTGGAAAGAAAATTACTGACGT
GGTTAATATCGGTATTGGCGGAAGCGATCTCGGTCCTTTGATGGTCACTGAAGCTCTCAA
ACCTTATTCAACTGGTTTGAAAATGCATTTTGTATCAAATATTGATGGTACACATTTAGC
TGAAACACTTAAAAAGATTTCTGCCGAGACAACACTTTTTATTATTGCGTCAAAAACGTT
CACTACACAGGAAACAATTACTAACGCTACATCAGCAAAAACATGGTTCTTGGATGTTGC
TAAAGATCCAAGTGCAGTAGCCAAGCATTTCGTTGCATTATCAACAAATGAAGAAAAAGC
AACAGCATTTGGAATTGACGCAAAAAATATGTTTGCATTCTGGGACTTTGTTGGTGGTCG
TTATAGCTTGTGGTCTGCTATTGGCTTATCAATTTCGCTCTCTATTGGCTTTGAAAATTT
T

>g2663.t49 Gene=g2663 Length=295
MSKPLLTTDPVYQKLQQYYNENGAKINIKQLFDSDPKRFDKFSLTLKTPNDGDILLDYSK
NRITDDVWKLLLQLAESRGLQQARTQMFSGEHINITEDRAVLHTALRNKSGKPVLVDGKD
VMPEINAVLEHMKEFTNQVVSGEWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYSTG
LKMHFVSNIDGTHLAETLKKISAETTLFIIASKTFTTQETITNATSAKTWFLDVAKDPSA
VAKHFVALSTNEEKATAFGIDAKNMFAFWDFVGGRYSLWSAIGLSISLSIGFENF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2663.t49 CDD cd05015 SIS_PGI_1 126 288 4.04667E-77
8 g2663.t49 Gene3D G3DSA:3.40.50.10490 - 5 106 2.0E-33
7 g2663.t49 Gene3D G3DSA:3.40.50.10490 - 107 295 2.0E-87
2 g2663.t49 PANTHER PTHR11469:SF3 GLUCOSE-6-PHOSPHATE ISOMERASE 6 295 4.6E-139
3 g2663.t49 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 6 295 4.6E-139
5 g2663.t49 PRINTS PR00662 Glucose-6-phosphate isomerase signature 155 174 7.2E-20
4 g2663.t49 PRINTS PR00662 Glucose-6-phosphate isomerase signature 266 284 7.2E-20
1 g2663.t49 Pfam PF00342 Phosphoglucose isomerase 57 295 3.9E-120
10 g2663.t49 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 270 283 -
11 g2663.t49 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 9 295 72.296
6 g2663.t49 SUPERFAMILY SSF53697 SIS domain 7 295 3.89E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed