Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t50 isoform g2663.t50 19452244 19453861
chr_3 g2663 g2663.t50 exon g2663.t50.exon1 19452244 19452865
chr_3 g2663 g2663.t50 cds g2663.t50.CDS1 19452245 19452865
chr_3 g2663 g2663.t50 exon g2663.t50.exon2 19452950 19453133
chr_3 g2663 g2663.t50 cds g2663.t50.CDS2 19452950 19453117
chr_3 g2663 g2663.t50 exon g2663.t50.exon3 19453705 19453861
chr_3 g2663 g2663.t50 TSS g2663.t50 NA NA
chr_3 g2663 g2663.t50 TTS g2663.t50 NA NA

Sequences

>g2663.t50 Gene=g2663 Length=963
ATGTCTTATAATGTCGGTATAGAAGAGACTCTACTGACAGCAATGCTGTGGGCTTCTACA
CTATTGACTCCTTCATCTGTTGTACTCATTCGATAGCCGTTTTTTGAGCAAGGTAGTCGG
AGTAATTTTCTTGTATTTGCAGTGATAAATTTTTAAAGTCTATTAAACCGAAAATGTCGA
AGCCTCTTCTTACAACCGATCCTGTTTATCAAAAACTTCAACAATATTACAATGAAAACG
GGGCAAAAATAAACATCAAACAATTATTTGATAGTGATCCAAAACGTTTCGATAAGTTTA
GCTTGACTTTAAAAACACCAAATGACGGTGATATTTTGCTGGATTACTCGAAAAATCGTA
TTACTGATGACGTGTGGAAGCTGTTGTTGCAACTTGCTGAGTCTCGTGGCTTGCAACAAG
CTCGCACTCAAATGTTCAGTGGAGAACACATCAATATAACTGAAGACCGTGCTGTTTTGC
ATACGGCATTGCGTAATAAATCTGGCAAACCGGTTCTTGTTGATGGCAAGGATGTTATGC
CAGAAATTAATGCTGTGTTAGAGCACATGAAGGAATTTACAAACCAAGTTGTTAGTGGTG
AATGGAAAGGCTATACTGGAAAGAAAATTACTGACGTGGTTAATATCGGTATTGGCGGAA
GCGATCTCGGTCCTTTGATGGTCACTGAAGCTCTCAAACCTTATTCAACTGGTTTGAAAA
TGCATTTTGTATCAAATATTGATGGTACACATTTAGCTGAAACACTTAAAAAGATTTCTG
CCGAGACAACACTTTTTATTATTGCGTCAAAAACGTTCACTACACAGGAAACAATTACTA
ACGCTACATCAGCAAAAACATGGTTCTTGGATGTTGCTAAAGATCCAAGTGCAGTAGCCA
AGCATTTCGTTGCATTATCAACAAATGAAGAAAAAGCAACAGCATTTGGAATTGACGCAA
AAA

>g2663.t50 Gene=g2663 Length=263
MSKPLLTTDPVYQKLQQYYNENGAKINIKQLFDSDPKRFDKFSLTLKTPNDGDILLDYSK
NRITDDVWKLLLQLAESRGLQQARTQMFSGEHINITEDRAVLHTALRNKSGKPVLVDGKD
VMPEINAVLEHMKEFTNQVVSGEWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYSTG
LKMHFVSNIDGTHLAETLKKISAETTLFIIASKTFTTQETITNATSAKTWFLDVAKDPSA
VAKHFVALSTNEEKATAFGIDAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2663.t50 CDD cd05015 SIS_PGI_1 126 261 0.000
6 g2663.t50 Gene3D G3DSA:3.40.50.10490 - 5 106 0.000
5 g2663.t50 Gene3D G3DSA:3.40.50.10490 - 107 263 0.000
2 g2663.t50 PANTHER PTHR11469:SF3 GLUCOSE-6-PHOSPHATE ISOMERASE 6 262 0.000
3 g2663.t50 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 6 262 0.000
1 g2663.t50 Pfam PF00342 Phosphoglucose isomerase 57 262 0.000
7 g2663.t50 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 9 263 60.786
4 g2663.t50 SUPERFAMILY SSF53697 SIS domain 7 262 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed