General information for g2663.t52
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glucose-6-phosphate isomerase.
Parent gene
- The parent gene g2663 is located on chr_3: 19453861..19455290 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2663 | g2663.t52 | isoform | g2663.t52 | 19452273 | 19453122 |
| chr_3 | g2663 | g2663.t52 | exon | g2663.t52.exon1 | 19452273 | 19452865 |
| chr_3 | g2663 | g2663.t52 | cds | g2663.t52.CDS1 | 19452275 | 19452865 |
| chr_3 | g2663 | g2663.t52 | exon | g2663.t52.exon2 | 19452964 | 19453122 |
| chr_3 | g2663 | g2663.t52 | cds | g2663.t52.CDS2 | 19452964 | 19452969 |
| chr_3 | g2663 | g2663.t52 | TSS | g2663.t52 | 19453774 | 19453774 |
| chr_3 | g2663 | g2663.t52 | TTS | g2663.t52 | NA | NA |
Sequences
>g2663.t52 Gene=g2663 Length=752
CGAAAATGTCGAAGCCTCTTCTTACAACCGATCCTGTTTATCAAAAACTTCAACAATATT
ACAATGAAAACGGGGCAAAAATAAACATCAAACAATTATTTGATAGTGATCCAAAACGTT
TCGATAAGTTTAGCTTGACTTTAAAAACACCAAATGACGGATTACTCGAAAAATCGTATT
ACTGATGACGTGTGGAAGCTGTTGTTGCAACTTGCTGAGTCTCGTGGCTTGCAACAAGCT
CGCACTCAAATGTTCAGTGGAGAACACATCAATATAACTGAAGACCGTGCTGTTTTGCAT
ACGGCATTGCGTAATAAATCTGGCAAACCGGTTCTTGTTGATGGCAAGGATGTTATGCCA
GAAATTAATGCTGTGTTAGAGCACATGAAGGAATTTACAAACCAAGTTGTTAGTGGTGAA
TGGAAAGGCTATACTGGAAAGAAAATTACTGACGTGGTTAATATCGGTATTGGCGGAAGC
GATCTCGGTCCTTTGATGGTCACTGAAGCTCTCAAACCTTATTCAACTGGTTTGAAAATG
CATTTTGTATCAAATATTGATGGTACACATTTAGCTGAAACACTTAAAAAGATTTCTGCC
GAGACAACACTTTTTATTATTGCGTCAAAAACGTTCACTACACAGGAAACAATTACTAAC
GCTACATCAGCAAAAACATGGTTCTTGGATGTTGCTAAAGATCCAAGTGCAGTAGCCAAG
CATTTCGTTGCATTATCAACAAATGAAGAAAA
>g2663.t52 Gene=g2663 Length=199
MTDYSKNRITDDVWKLLLQLAESRGLQQARTQMFSGEHINITEDRAVLHTALRNKSGKPV
LVDGKDVMPEINAVLEHMKEFTNQVVSGEWKGYTGKKITDVVNIGIGGSDLGPLMVTEAL
KPYSTGLKMHFVSNIDGTHLAETLKKISAETTLFIIASKTFTTQETITNATSAKTWFLDV
AKDPSAVAKHFVALSTNEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2663.t52 | CDD | cd05015 | SIS_PGI_1 | 72 | 199 | 0.000 |
| 5 | g2663.t52 | Gene3D | G3DSA:3.40.50.10490 | - | 1 | 52 | 0.000 |
| 6 | g2663.t52 | Gene3D | G3DSA:3.40.50.10490 | - | 53 | 199 | 0.000 |
| 2 | g2663.t52 | PANTHER | PTHR11469:SF3 | GLUCOSE-6-PHOSPHATE ISOMERASE | 2 | 197 | 0.000 |
| 3 | g2663.t52 | PANTHER | PTHR11469 | GLUCOSE-6-PHOSPHATE ISOMERASE | 2 | 197 | 0.000 |
| 1 | g2663.t52 | Pfam | PF00342 | Phosphoglucose isomerase | 3 | 198 | 0.000 |
| 7 | g2663.t52 | ProSiteProfiles | PS51463 | Glucose-6-phosphate isomerase family profile. | 1 | 199 | 53.917 |
| 4 | g2663.t52 | SUPERFAMILY | SSF53697 | SIS domain | 2 | 199 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004347 | glucose-6-phosphate isomerase activity | MF |
| GO:0006094 | gluconeogenesis | BP |
| GO:0006096 | glycolytic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed