Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2663 g2663.t6 TTS g2663.t6 19450762 19450762
chr_3 g2663 g2663.t6 isoform g2663.t6 19450776 19451414
chr_3 g2663 g2663.t6 exon g2663.t6.exon1 19450776 19451414
chr_3 g2663 g2663.t6 cds g2663.t6.CDS1 19450968 19451321
chr_3 g2663 g2663.t6 TSS g2663.t6 NA NA

Sequences

>g2663.t6 Gene=g2663 Length=639
TTTATTGCTCCTGCTCAAACTCAAAATCCTATTGCTGGAGGTATTCATCATAAATTGATT
CTTGCCAACTTTTTGGCACAAACTGAGGCTCTCATGTGCGGTAAGACCGAACAACAAGTC
AGAGCTGAATTGGAAAAAGCTGGTATGAAAGGAGAAAAATTAGAGAATCTTGTTCCACAT
AAAATCTTTACTGGAAATCGCCCAACTAACTCAATTGTTGTGAAGAAAGTTACACCATTC
ACTCTTGGTGCTCTCATTGCAATGTATGAGCACAAAATCTTCACACAAGGCATCATTTGG
GACGTTAATTCATTTGATCAATGGGGTGTTGAACTTGGAAAAGCATTGGCAAAGGCAATT
GAAGGTGATTTGGCAAACAATGACAAAGTTTCAAGTCATGATGCATCAACAAACGGCTTG
ATTAATTTTATCAAATCTAGCTGGTAAAAATCTCACTCATCATGCACTTTAGTAATTATA
CATATTGATTACACAGACAGATTCCTTATTATTTTCATTATTATATGCTTGCTACCATAC
TTAACATCTAAACGTTAAACGTTAGAAAAATGTTATTCCATTTATTTGGAAAAGAATAAA
TCGAAAAAAGTTAATAAAATTGCTGATTTCATGTAGAAA

>g2663.t6 Gene=g2663 Length=117
MCGKTEQQVRAELEKAGMKGEKLENLVPHKIFTGNRPTNSIVVKKVTPFTLGALIAMYEH
KIFTQGIIWDVNSFDQWGVELGKALAKAIEGDLANNDKVSSHDASTNGLINFIKSSW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2663.t6 CDD cd05016 SIS_PGI_2 32 89 1.10909E-34
8 g2663.t6 Gene3D G3DSA:3.40.50.10490 - 1 75 1.3E-34
9 g2663.t6 Gene3D G3DSA:1.10.1390.10 - 76 116 2.1E-20
2 g2663.t6 PANTHER PTHR11469:SF3 GLUCOSE-6-PHOSPHATE ISOMERASE 1 115 1.1E-47
3 g2663.t6 PANTHER PTHR11469 GLUCOSE-6-PHOSPHATE ISOMERASE 1 115 1.1E-47
6 g2663.t6 PRINTS PR00662 Glucose-6-phosphate isomerase signature 34 52 6.3E-22
5 g2663.t6 PRINTS PR00662 Glucose-6-phosphate isomerase signature 52 66 6.3E-22
4 g2663.t6 PRINTS PR00662 Glucose-6-phosphate isomerase signature 66 79 6.3E-22
1 g2663.t6 Pfam PF00342 Phosphoglucose isomerase 1 110 4.9E-47
11 g2663.t6 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 66 83 -
12 g2663.t6 ProSiteProfiles PS51463 Glucose-6-phosphate isomerase family profile. 1 117 30.664
7 g2663.t6 SUPERFAMILY SSF53697 SIS domain 1 115 4.45E-43

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004347 glucose-6-phosphate isomerase activity MF
GO:0006094 gluconeogenesis BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values