Gene loci information

Transcript annotation

  • This transcript has been annotated as Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2664 g2664.t1 TSS g2664.t1 19453870 19453870
chr_3 g2664 g2664.t1 isoform g2664.t1 19454310 19458171
chr_3 g2664 g2664.t1 exon g2664.t1.exon1 19454310 19454343
chr_3 g2664 g2664.t1 cds g2664.t1.CDS1 19454310 19454343
chr_3 g2664 g2664.t1 exon g2664.t1.exon2 19454898 19455194
chr_3 g2664 g2664.t1 cds g2664.t1.CDS2 19454898 19455194
chr_3 g2664 g2664.t1 exon g2664.t1.exon3 19455290 19457070
chr_3 g2664 g2664.t1 cds g2664.t1.CDS3 19455290 19457070
chr_3 g2664 g2664.t1 exon g2664.t1.exon4 19457132 19457198
chr_3 g2664 g2664.t1 cds g2664.t1.CDS4 19457132 19457198
chr_3 g2664 g2664.t1 exon g2664.t1.exon5 19457258 19457412
chr_3 g2664 g2664.t1 cds g2664.t1.CDS5 19457258 19457412
chr_3 g2664 g2664.t1 exon g2664.t1.exon6 19457578 19457824
chr_3 g2664 g2664.t1 cds g2664.t1.CDS6 19457578 19457824
chr_3 g2664 g2664.t1 exon g2664.t1.exon7 19457885 19458171
chr_3 g2664 g2664.t1 cds g2664.t1.CDS7 19457885 19458171
chr_3 g2664 g2664.t1 TTS g2664.t1 19458532 19458532

Sequences

>g2664.t1 Gene=g2664 Length=2868
ATGGAAGAAGAAATCAAGAGTTATGCTAGCAACGAAATTGGTGAATCATCGACAATACCA
AACTATCATCATCCGTCTGCATCAAAAATGAATCATAAGAATGGCTTTCAAGATGAAGAT
GACGGTTTAGGTCCTATGCCATTAAATTGGGAAAAAGCAATTACAGAAAACGGTGAAATA
TATTTTATTGATCACACGACAGGCCAATCACATTGGCTTGATCCAAGATTGAGAAATTTT
CAAAAGAAATCACTTGAAGAATGCGAAGATGATGAACTTCCGTATGGGTGGGAAAGAATC
GTTGATCCAGAATATGGAATATATTATATAGACCATGTGAATAGACGAACTCAATATGAA
AATCCTGTGATACAAGCAAAACGTTCTTTAGAAATGCAACAACAGCAACAGCAGAGACTT
GAAGTTGCATCAAATTACATGCCAGAAACAGTTGACTTGCCATTGGAACCTAAGAACTTT
TTCACAAAGAACCCAGCAGAATTATTGGGTGAAAGAATTCAAACAACATTAGTCAAATCA
CAGCGTGGTTTGGGTTTTACTGTAATTGGTGGTGATTGTAATGATGAAAATATTGATGAA
TTTCTTCAAATAAAATCAATTGTTCCAAATTCACCGGCATCATTTGATGGAAAACTTAAA
ACTGGAGACATCTTGGTATTTGTGAATCACATTTGCGTTCTTGGTTTTACACATCATGAA
ATGGTCAACATTTTTCAATCAATTATGCCTGGTGATGAAGTTCATTTGGATGTATGTCGA
GGATATAAGTTGCCATTTGATCCAAGCGATCCTAATACAGAAATTGTAACTACAATTGCT
GTAAATGGACTTAATGATGATGTTGAGAAGAACAGACTTTATTTAGACATTCTTAATGAC
AATTATAATTTTCTTGACATGTCAAACGATGCGGATCTAAGTTTTAAAAATCAATCAGCA
AAAAGTTCATTTGAAATTCCTGAAATTCACGATATTATAATTATAAAAGGTGATCAAGGC
TTTGGATTTACAATTGCTGAAAGTAATTTGTGGGGACAAAAAGTGAAGAAAATTTTGGAT
CGTCAATGCTGTAAAGATCTAATGGAAGGTGATATTCTTTTGAGTATCAATAATATTAAT
ATCAAAAATCTTACACATAATGAAGTCGTACAAGTTTTAAAAGAGTGTCCGAAAAATCAA
GAGACCATTTTGCGTGTTCAACGTGGTTTGATCAGAAGCAGTCTTAATAAATTTAATGGA
AAAGTGAGAAGCAAACTTGATAGCGCAGGAACATCGAACGATCAAAAATCGATTACGACT
AATGGATTATACCGTAGTAAAACGCCAACCGCAGATATTTATAGCACACAAACAAAAGAA
ACGCTGCCAATTCGCCCAAAAACACCACTTGTTGATACAAGATCGCGAGTTCAAATGAAA
ACACCGATACAGTTAAATGATTTAAATACACATGATATCGAACTTGATAGTAAACTAAAT
GATCATGACGATATGATTATTGACGATAATAAATCTACAATTTCGACAGCAACAACAGCC
TACGATACAACAAAATTACTCACCGAACAATTTGATAATTTTGGAATAAACGATCAGAGA
AGTGACACCTACACTACAACAGACTCTATAACATCGAAGACAAGTGGCGGTGTACGAAAC
CGTTTCTTCAGTCCAGTCGATATTAAAAATGGAAATGACCACAGTGATTACTATTATGCA
AATTCATCTCACTCTTACTCTCTGCCACCTCCGCCTTCAATTCCATCAGCATCTCAAGGT
CATTTTATTCAACCAATTCAACCTTTGCAAAATCCATCAACAATTCCCTATCAACATCAA
CCACATGACAGTTGCTTTTGTTATGATTGTCAGGACTATCGATTGAAACAATCTCAACAT
AGTGATTATGTGTCATCATCTAATAATACCTCAGATTATAGTCTACTTCAAAATCAATTT
AACTTGCCACCACAAATGAGCGATAATATCGGTCAGCGAATAAATAATTATTTGATGGAT
CGTAAAAGAGGAGGAGTTGGAAGTGAACTTTATAACAATTATCACTCGTATCGACCAAAT
GGAAGCGCTGTGGATGATTTTTATTACGTTGAAGTGACGTTAGAACGACAACAAATGAGC
TATGTCAACAGTGATGGCACACAATCAAGAGGAACATTTGGATTTCGTATTGTTGGTGGT
ACAGAAGAAGGTAGTCAAGTGTGTGTCGGTTATATAGTTAAAGATGGACCAGCAGATCGT
GATCCGAGAATTCAAACCGGTGATGAAATTGTGAACATTAATGGAGTAAATGTGGAATGT
GCATCTCATCATCTTGTGGTAAAATTAATGAATGATGCAGCCCTTCTTGGACAAGTAACA
ATGCTACTAAGAAAAAGAAAACCACAGAATCTCAACAATTTTTATCGACCACCGCAAAGT
TCTTATGTGAACCAACCAGTTATTCCAAATACTTATGATGTGATTATTAATCGACAAGAA
CATGAAGGTTTTGGTTTTGTAATAATCTCATCTTCTAATCAGTCATCCGGCTCAACAATT
GGTAAAATTATACCAAATAGTCCAGCTGATAATGGTCAGCTCAAGATTGGTGATCGAATC
ATTAGAGTTAATGATAATGACATCACAAATATGTCACATGGCGATGTCGTTAAGATAATC
AAGGATTCAGGACTAACAGTTGTGCTCACTGTTAGCAATTCAACAATCGCACGTTCTAGT
GATTTCATCATAAATGAAGGCAATCATTCACCATACAATTCAAATATTAATACTAACAGT
AGCAATAGTAACCCATTGAATATGAACTCATTTCCCATGATAACCTGA

>g2664.t1 Gene=g2664 Length=955
MEEEIKSYASNEIGESSTIPNYHHPSASKMNHKNGFQDEDDGLGPMPLNWEKAITENGEI
YFIDHTTGQSHWLDPRLRNFQKKSLEECEDDELPYGWERIVDPEYGIYYIDHVNRRTQYE
NPVIQAKRSLEMQQQQQQRLEVASNYMPETVDLPLEPKNFFTKNPAELLGERIQTTLVKS
QRGLGFTVIGGDCNDENIDEFLQIKSIVPNSPASFDGKLKTGDILVFVNHICVLGFTHHE
MVNIFQSIMPGDEVHLDVCRGYKLPFDPSDPNTEIVTTIAVNGLNDDVEKNRLYLDILND
NYNFLDMSNDADLSFKNQSAKSSFEIPEIHDIIIIKGDQGFGFTIAESNLWGQKVKKILD
RQCCKDLMEGDILLSINNINIKNLTHNEVVQVLKECPKNQETILRVQRGLIRSSLNKFNG
KVRSKLDSAGTSNDQKSITTNGLYRSKTPTADIYSTQTKETLPIRPKTPLVDTRSRVQMK
TPIQLNDLNTHDIELDSKLNDHDDMIIDDNKSTISTATTAYDTTKLLTEQFDNFGINDQR
SDTYTTTDSITSKTSGGVRNRFFSPVDIKNGNDHSDYYYANSSHSYSLPPPPSIPSASQG
HFIQPIQPLQNPSTIPYQHQPHDSCFCYDCQDYRLKQSQHSDYVSSSNNTSDYSLLQNQF
NLPPQMSDNIGQRINNYLMDRKRGGVGSELYNNYHSYRPNGSAVDDFYYVEVTLERQQMS
YVNSDGTQSRGTFGFRIVGGTEEGSQVCVGYIVKDGPADRDPRIQTGDEIVNINGVNVEC
ASHHLVVKLMNDAALLGQVTMLLRKRKPQNLNNFYRPPQSSYVNQPVIPNTYDVIINRQE
HEGFGFVIISSSNQSSGSTIGKIIPNSPADNGQLKIGDRIIRVNDNDITNMSHGDVVKII
KDSGLTVVLTVSNSTIARSSDFIINEGNHSPYNSNINTNSSNSNPLNMNSFPMIT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
25 g2664.t1 CDD cd00201 WW 47 77 4.34481E-9
26 g2664.t1 CDD cd00201 WW 94 124 2.76214E-8
21 g2664.t1 CDD cd00992 PDZ_signaling 176 259 1.16189E-14
24 g2664.t1 CDD cd00992 PDZ_signaling 336 407 2.56314E-10
22 g2664.t1 CDD cd00992 PDZ_signaling 711 804 1.10661E-14
23 g2664.t1 CDD cd00992 PDZ_signaling 831 911 8.57454E-22
20 g2664.t1 Gene3D G3DSA:2.20.70.10 - 37 82 7.5E-14
19 g2664.t1 Gene3D G3DSA:2.20.70.10 - 93 124 1.0E-14
16 g2664.t1 Gene3D G3DSA:2.30.42.10 - 156 285 9.2E-42
15 g2664.t1 Gene3D G3DSA:2.30.42.10 - 320 425 1.8E-30
18 g2664.t1 Gene3D G3DSA:2.30.42.10 - 711 828 3.0E-21
17 g2664.t1 Gene3D G3DSA:2.30.42.10 - 829 920 1.8E-23
7 g2664.t1 PANTHER PTHR10316:SF40 LD27118P-RELATED 36 914 1.1E-221
8 g2664.t1 PANTHER PTHR10316 MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED 36 914 1.1E-221
5 g2664.t1 Pfam PF00397 WW domain 47 75 1.2E-7
6 g2664.t1 Pfam PF00397 WW domain 93 122 1.1E-7
3 g2664.t1 Pfam PF00595 PDZ domain 175 256 4.4E-8
2 g2664.t1 Pfam PF00595 PDZ domain 332 398 2.0E-6
4 g2664.t1 Pfam PF00595 PDZ domain 728 800 8.8E-11
1 g2664.t1 Pfam PF00595 PDZ domain 834 911 1.3E-14
27 g2664.t1 ProSitePatterns PS01159 WW/rsp5/WWP domain signature. 97 122 -
38 g2664.t1 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 44 77 14.895
39 g2664.t1 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 91 124 12.826
34 g2664.t1 ProSiteProfiles PS50106 PDZ domain profile. 174 247 14.717
37 g2664.t1 ProSiteProfiles PS50106 PDZ domain profile. 331 395 11.461
36 g2664.t1 ProSiteProfiles PS50106 PDZ domain profile. 711 793 15.199
35 g2664.t1 ProSiteProfiles PS50106 PDZ domain profile. 833 915 18.295
32 g2664.t1 SMART SM00456 ww_5 45 77 4.3E-9
33 g2664.t1 SMART SM00456 ww_5 92 124 3.8E-8
28 g2664.t1 SMART SM00228 pdz_new 182 262 1.0E-16
30 g2664.t1 SMART SM00228 pdz_new 339 410 4.1E-11
29 g2664.t1 SMART SM00228 pdz_new 731 807 6.7E-14
31 g2664.t1 SMART SM00228 pdz_new 842 915 6.2E-16
14 g2664.t1 SUPERFAMILY SSF51045 WW domain 41 79 9.05E-11
13 g2664.t1 SUPERFAMILY SSF51045 WW domain 89 125 4.3E-11
12 g2664.t1 SUPERFAMILY SSF50156 PDZ domain-like 150 264 4.99E-24
9 g2664.t1 SUPERFAMILY SSF50156 PDZ domain-like 319 410 3.29E-16
11 g2664.t1 SUPERFAMILY SSF50156 PDZ domain-like 729 808 2.63E-18
10 g2664.t1 SUPERFAMILY SSF50156 PDZ domain-like 813 914 1.71E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values