Gene loci information

Transcript annotation

  • This transcript has been annotated as Endophilin-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2666 g2666.t1 TTS g2666.t1 19467128 19467128
chr_3 g2666 g2666.t1 isoform g2666.t1 19467573 19470275
chr_3 g2666 g2666.t1 exon g2666.t1.exon1 19467573 19467695
chr_3 g2666 g2666.t1 cds g2666.t1.CDS1 19467573 19467695
chr_3 g2666 g2666.t1 exon g2666.t1.exon2 19467757 19467926
chr_3 g2666 g2666.t1 cds g2666.t1.CDS2 19467757 19467926
chr_3 g2666 g2666.t1 exon g2666.t1.exon3 19468336 19468928
chr_3 g2666 g2666.t1 cds g2666.t1.CDS3 19468336 19468928
chr_3 g2666 g2666.t1 exon g2666.t1.exon4 19469065 19469333
chr_3 g2666 g2666.t1 cds g2666.t1.CDS4 19469065 19469333
chr_3 g2666 g2666.t1 exon g2666.t1.exon5 19469388 19469584
chr_3 g2666 g2666.t1 cds g2666.t1.CDS5 19469388 19469584
chr_3 g2666 g2666.t1 exon g2666.t1.exon6 19469655 19469865
chr_3 g2666 g2666.t1 cds g2666.t1.CDS6 19469655 19469865
chr_3 g2666 g2666.t1 exon g2666.t1.exon7 19470231 19470275
chr_3 g2666 g2666.t1 cds g2666.t1.CDS7 19470231 19470275
chr_3 g2666 g2666.t1 TSS g2666.t1 19470549 19470549

Sequences

>g2666.t1 Gene=g2666 Length=1608
ATGGCTTTTGCAAAGATACAGAAACAGTTCAATATTGCGAATCAACTTATCACAGAAAAA
GTTTTTAATGGAGAAAAATCAAAATTCAATGATGATTTTACTGAAATGGAGAAAAAGACA
GATGCAACTGTCGATATGGTTGAAGATTTGCAACAAAAAACTAAAGAATTTCTTCAACCT
AATCCAGCTGCTCGTGCAAAAATGGCAGCAATGAAATTGTCTTCAGGTCAAGCAAAAACT
CAATATCCTCAAACAGAGGGAATACTAGGAAATGCTTGTATGGCCCATGGAAAAAAATTA
GGCGAGGATGATATTCTTGGTCAATCGTTGATTGAAATTGGAGAATCGCTAAAACAAGTT
GCTGATGTCAAATATTCACTCGATAATAATGTAAAGCAAAATTTTCTCGAACCACTTCAA
CATTTACAAAATAATGATATTAAAGAAGTTTTGCATCATAGAAAAAAGCTGTCAAATCGT
CGATTAGATTATGATGCTAAGAGAAGAAAGCAAAATAAAGGAGGCGTTACAGAAGATGAG
ATTCGAATTGCACAAGAAAAATTTAGTGAATCTCTAAGTAATGCATCAACAAGCATGCAT
CATCTTTTAGAGAATGACGTTGAGCTTATATCACAATTGGCCGTATTTTCTGAAAGTCTT
ATGACATATTATCAACAATGTGCTGAAATTATGCAGGAACTTACAAACAAATTATATGAA
AAAAAATCGGAAGCGATGAACAGACCGAAGAAAAGTTTCATACCGACCACTCTATCCGAC
TTAAATATTGATTCACTCTCAATTGGAAGCGGCAGTAATGATCGACAAAACAACAACTTT
AATTCAAATGGTGCGCGTCTTAATAATTTTGATAGATTTAAAGCAACTTCATCCTCAAAT
ATTTCCTTTAAACATTCCAATAATAATAATATTAATGGTAACAGTAATAGTAATTTTGGC
CGTACAAGTAAGTTGTATGGTTCTCAGTCAAATCTATCTACAGCATCCTCTACAGGTTCA
CGTTATCAAACTGTACATAATAATAGCAAAAGCAATTATAATATCAATTCACCTAAATCA
TCAGCATCGGGTGATATTGATAAATGGATGCAAGCGTGGGATGATAATGCAAACAATTAT
CGCGCACCATCATATCATTCAAATAAACAAACACATTCCTTTCACAAATTTAATAATAAT
AATTTCAAAAGTTTTAATTCTAATCAAACTGCAAATGTGCGAAACTCTTCTTTCAATTCT
GTTGATCCATTTGATCCTTTTGATGACGATGCTCCATTTTCCGATCCATGGTCAGCAAAA
CCATCTATTTCAAATCCGATTCCATTGTCACAACCACAACAACAATCAACTGTCAATTTG
ATCAACAACTTTAACAATAATTTGCGTAATCAATCAAATCCATATCCACATTGTGTCGCA
CTTTACGATTTTGATGCTGAAAATGATGGTGAATTGACCTTTAAGGAAAATGATGTTATT
AGATTGCTCTCAAAGGTCGATGACAACTGGTACAGTGGTATGCTTCAAAATGGTCGCAGT
GGTTTTATTCCAAAAGACTATGTTCAAGTGAAAGTTCCCTTACCATAA

>g2666.t1 Gene=g2666 Length=535
MAFAKIQKQFNIANQLITEKVFNGEKSKFNDDFTEMEKKTDATVDMVEDLQQKTKEFLQP
NPAARAKMAAMKLSSGQAKTQYPQTEGILGNACMAHGKKLGEDDILGQSLIEIGESLKQV
ADVKYSLDNNVKQNFLEPLQHLQNNDIKEVLHHRKKLSNRRLDYDAKRRKQNKGGVTEDE
IRIAQEKFSESLSNASTSMHHLLENDVELISQLAVFSESLMTYYQQCAEIMQELTNKLYE
KKSEAMNRPKKSFIPTTLSDLNIDSLSIGSGSNDRQNNNFNSNGARLNNFDRFKATSSSN
ISFKHSNNNNINGNSNSNFGRTSKLYGSQSNLSTASSTGSRYQTVHNNSKSNYNINSPKS
SASGDIDKWMQAWDDNANNYRAPSYHSNKQTHSFHKFNNNNFKSFNSNQTANVRNSSFNS
VDPFDPFDDDAPFSDPWSAKPSISNPIPLSQPQQQSTVNLINNFNNNLRNQSNPYPHCVA
LYDFDAENDGELTFKENDVIRLLSKVDDNWYSGMLQNGRSGFIPKDYVQVKVPLP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g2666.t1 Gene3D G3DSA:1.20.1270.60 Arfaptin 1 244 5.5E-68
13 g2666.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 465 535 1.1E-22
17 g2666.t1 MobiDBLite mobidb-lite consensus disorder prediction 330 361 -
4 g2666.t1 PANTHER PTHR14167:SF45 ENDOPHILIN-A3 1 262 5.3E-97
6 g2666.t1 PANTHER PTHR14167 SH3 DOMAIN-CONTAINING 1 262 5.3E-97
3 g2666.t1 PANTHER PTHR14167:SF45 ENDOPHILIN-A3 455 535 5.3E-97
5 g2666.t1 PANTHER PTHR14167 SH3 DOMAIN-CONTAINING 455 535 5.3E-97
8 g2666.t1 PRINTS PR00452 SH3 domain signature 476 486 1.0E-7
10 g2666.t1 PRINTS PR00452 SH3 domain signature 490 505 1.0E-7
9 g2666.t1 PRINTS PR00452 SH3 domain signature 507 516 1.0E-7
7 g2666.t1 PRINTS PR00452 SH3 domain signature 519 531 1.0E-7
2 g2666.t1 Pfam PF03114 BAR domain 6 238 1.5E-58
1 g2666.t1 Pfam PF00018 SH3 domain 479 525 1.0E-15
19 g2666.t1 ProSiteProfiles PS51021 BAR domain profile. 18 247 26.119
18 g2666.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 473 533 28.376
15 g2666.t1 SMART SM00721 5bar 5 240 1.1E-60
16 g2666.t1 SMART SM00326 SH3_2 476 532 1.9E-21
11 g2666.t1 SUPERFAMILY SSF103657 BAR/IMD domain-like 13 238 1.57E-59
12 g2666.t1 SUPERFAMILY SSF50044 SH3-domain 474 530 3.81E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values