Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2669 g2669.t4 isoform g2669.t4 19477183 19478651
chr_3 g2669 g2669.t4 exon g2669.t4.exon1 19477183 19478557
chr_3 g2669 g2669.t4 TTS g2669.t4 19477187 19477187
chr_3 g2669 g2669.t4 cds g2669.t4.CDS1 19477798 19478466
chr_3 g2669 g2669.t4 exon g2669.t4.exon2 19478613 19478651
chr_3 g2669 g2669.t4 TSS g2669.t4 19478674 19478674

Sequences

>g2669.t4 Gene=g2669 Length=1414
ATGTTGCGAAATTTCTATAAAAGTGCAAATTTAAGGTTTAGTTCTTTCGACACACACAAG
AAATGTAAATGAAACAGATGTTAACCACTTGTCAAATCTTGCCGATGAGTGGTGGAACAA
AAATGGAGAGATGAAAGCTCTACATGCTATTAATCAGTTGCGTGTTCCTTTGATTCGTGA
TGGTCTTATAAGTACTGGAATCGTAAAAACTGAAAATATAAATAAATCGAATGTACTAGA
TGGGATAAAAATTTTAGAAGTTGGTTGTGGTGCTGGAATATTAACTGAGTCTTTAGCAAA
GTTGAAAGCGAATGTTGTAGGAATCGATCCATCAGAAAAATTACTTGAAACAGCTAAAAA
TCATATGCAAAACAAAAAATTTAAAATCAATTACATATGTACAACTGTTGAAGAACATTC
TGAAAATCATAGAGAAAATTACGACGCAGTAATTGCGAGTGAAGTTTTAGAACATGTTCC
CAATCAAAAATCATTTCTCAAAGAATGTGTAAACTGTCTTAAGCCTGGTGGAAGTATTTT
TGTGACAACATTGAATAAAACACAAGCATCTTGGTTGGGTGGAATCATTGCAGCTGAATA
TATTTTAAATCTTGTTCCAAAAGGCACTCACGATTTTGATAAATTCATTAGTCCATCAGA
AGTTTCTAAAATTTTAGATGAATTCAATTGCACTACAATTTTAGTTCATGGCTTTAGATA
TGAATTTTGGAGAAATGTTGCAAAATGGCAAAAATACGATGGCATCAATTATGCTCTACA
CGCTATTAAAAATTCCTAATAATTATATTTCGATATTTTATTAGATTTTTCAAATAAATT
GATGACATTTAAACGTATGCTCAATTCTTTTTAATTATTTATATTATTCTTAGACAACCA
TCAATCTTGGTGCAATATTCATTGCCATCAACTCTTGGAATAACAATTTTGCAGCATAAG
GAAGTTTGACTTGAGAAATCTAAGATAAGAAAAAAGAAAAGCAATGTGAAATTGAATTTT
AATATTTATATATGAAATTACATACCTGTGTCTTATTTTTACATCCTTTGCATTCAAAAG
TATTATTTCTCAAATTAGCAATAGCAATCAATCCACAAAAATTACAAACATGAATACGAT
AAGGATCAGAGACTTCGAATAAACGCTCACGCAAAAATTGAGCAGCGCCATGAGAAATTT
GACAATCACGTTCCATTTCACCGAAACGCAAACCACCATCACGAGCACGACCTTCCATAG
GTTGTCGAACGAGAATTTGAACAGGACCACGAGCACGAGAGTGAATTTTATCATCTACCA
TGTGTTTGAGACGTTGATAGTATGTTGGACCTAAAAATTAAAATGTTTAACTAAATGCTA
TAAAATAAATAAGAAAAATCATTCTTACCTAAGA

>g2669.t4 Gene=g2669 Length=222
MKALHAINQLRVPLIRDGLISTGIVKTENINKSNVLDGIKILEVGCGAGILTESLAKLKA
NVVGIDPSEKLLETAKNHMQNKKFKINYICTTVEEHSENHRENYDAVIASEVLEHVPNQK
SFLKECVNCLKPGGSIFVTTLNKTQASWLGGIIAAEYILNLVPKGTHDFDKFISPSEVSK
ILDEFNCTTILVHGFRYEFWRNVAKWQKYDGINYALHAIKNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2669.t4 CDD cd02440 AdoMet_MTases 40 139 0
5 g2669.t4 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 1 221 0
2 g2669.t4 PANTHER PTHR43464 METHYLTRANSFERASE 2 221 0
3 g2669.t4 PANTHER PTHR43464:SF19 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 2 221 0
1 g2669.t4 Pfam PF08241 Methyltransferase domain 42 138 0
4 g2669.t4 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 31 207 0
6 g2669.t4 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 1 214 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity MF
GO:0008168 methyltransferase activity MF
GO:0006744 ubiquinone biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed