Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2669 g2669.t6 TTS g2669.t6 19477741 19477741
chr_3 g2669 g2669.t6 isoform g2669.t6 19477798 19478651
chr_3 g2669 g2669.t6 exon g2669.t6.exon1 19477798 19478541
chr_3 g2669 g2669.t6 cds g2669.t6.CDS1 19477798 19478541
chr_3 g2669 g2669.t6 exon g2669.t6.exon2 19478613 19478651
chr_3 g2669 g2669.t6 cds g2669.t6.CDS2 19478613 19478651
chr_3 g2669 g2669.t6 TSS g2669.t6 19478674 19478674

Sequences

>g2669.t6 Gene=g2669 Length=783
ATGTTGCGAAATTTCTATAAAAGTGCAAATTTAAGGTTTACAAGAAATGTAAATGAAACA
GATGTTAACCACTTGTCAAATCTTGCCGATGAGTGGTGGAACAAAAATGGAGAGATGAAA
GCTCTACATGCTATTAATCAGTTGCGTGTTCCTTTGATTCGTGATGGTCTTATAAGTACT
GGAATCGTAAAAACTGAAAATATAAATAAATCGAATGTACTAGATGGGATAAAAATTTTA
GAAGTTGGTTGTGGTGCTGGAATATTAACTGAGTCTTTAGCAAAGTTGAAAGCGAATGTT
GTAGGAATCGATCCATCAGAAAAATTACTTGAAACAGCTAAAAATCATATGCAAAACAAA
AAATTTAAAATCAATTACATATGTACAACTGTTGAAGAACATTCTGAAAATCATAGAGAA
AATTACGACGCAGTAATTGCGAGTGAAGTTTTAGAACATGTTCCCAATCAAAAATCATTT
CTCAAAGAATGTGTAAACTGTCTTAAGCCTGGTGGAAGTATTTTTGTGACAACATTGAAT
AAAACACAAGCATCTTGGTTGGGTGGAATCATTGCAGCTGAATATATTTTAAATCTTGTT
CCAAAAGGCACTCACGATTTTGATAAATTCATTAGTCCATCAGAAGTTTCTAAAATTTTA
GATGAATTCAATTGCACTACAATTTTAGTTCATGGCTTTAGATATGAATTTTGGAGAAAT
GTTGCAAAATGGCAAAAATACGATGGCATCAATTATGCTCTACACGCTATTAAAAATTCC
TAA

>g2669.t6 Gene=g2669 Length=260
MLRNFYKSANLRFTRNVNETDVNHLSNLADEWWNKNGEMKALHAINQLRVPLIRDGLIST
GIVKTENINKSNVLDGIKILEVGCGAGILTESLAKLKANVVGIDPSEKLLETAKNHMQNK
KFKINYICTTVEEHSENHRENYDAVIASEVLEHVPNQKSFLKECVNCLKPGGSIFVTTLN
KTQASWLGGIIAAEYILNLVPKGTHDFDKFISPSEVSKILDEFNCTTILVHGFRYEFWRN
VAKWQKYDGINYALHAIKNS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2669.t6 CDD cd02440 AdoMet_MTases 78 177 0.00000
6 g2669.t6 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 21 259 0.00000
4 g2669.t6 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 21 259 36.61012
2 g2669.t6 PANTHER PTHR43464 METHYLTRANSFERASE 12 254 0.00000
3 g2669.t6 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 12 254 0.00000
1 g2669.t6 Pfam PF08241 Methyltransferase domain 80 176 0.00000
5 g2669.t6 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 27 245 0.00000
7 g2669.t6 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 22 252 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity MF
GO:0008168 methyltransferase activity MF
GO:0006744 ubiquinone biosynthetic process BP

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed