Gene loci information

Transcript annotation

  • This transcript has been annotated as Kelch-like ECH-associated protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2670 g2670.t2 isoform g2670.t2 19485813 19488669
chr_3 g2670 g2670.t2 exon g2670.t2.exon1 19485813 19485976
chr_3 g2670 g2670.t2 TSS g2670.t2 19485814 19485814
chr_3 g2670 g2670.t2 cds g2670.t2.CDS1 19485830 19485976
chr_3 g2670 g2670.t2 exon g2670.t2.exon2 19486038 19486130
chr_3 g2670 g2670.t2 cds g2670.t2.CDS2 19486038 19486130
chr_3 g2670 g2670.t2 exon g2670.t2.exon3 19486188 19486705
chr_3 g2670 g2670.t2 cds g2670.t2.CDS3 19486188 19486705
chr_3 g2670 g2670.t2 exon g2670.t2.exon4 19486781 19487119
chr_3 g2670 g2670.t2 cds g2670.t2.CDS4 19486781 19487119
chr_3 g2670 g2670.t2 exon g2670.t2.exon5 19487233 19487373
chr_3 g2670 g2670.t2 cds g2670.t2.CDS5 19487233 19487373
chr_3 g2670 g2670.t2 exon g2670.t2.exon6 19487438 19487525
chr_3 g2670 g2670.t2 cds g2670.t2.CDS6 19487438 19487525
chr_3 g2670 g2670.t2 exon g2670.t2.exon7 19487601 19487738
chr_3 g2670 g2670.t2 cds g2670.t2.CDS7 19487601 19487738
chr_3 g2670 g2670.t2 exon g2670.t2.exon8 19487792 19487947
chr_3 g2670 g2670.t2 cds g2670.t2.CDS8 19487792 19487947
chr_3 g2670 g2670.t2 exon g2670.t2.exon9 19488019 19488669
chr_3 g2670 g2670.t2 cds g2670.t2.CDS9 19488019 19488669
chr_3 g2670 g2670.t2 TTS g2670.t2 19488983 19488983

Sequences

>g2670.t2 Gene=g2670 Length=2288
AGTATTCAGCGGACACAATGGATACGACAGATGATGATGACATATTAATGACTGCATCGT
CGTCACCACCGCAATCAAAATCGTCAGATGATCTCGGCGACATGACATTTTGCATGTCAA
ATTATGCGAAAGAAGTCCTGAGAATGATGTACATGATGCGACAGCATCACATGCTCACCG
ATTGTGTTCTTGAAGTAGACAATGAGCTGTTTCATGTTCATAAAGTTGTATTATCATCAG
CTAGTCCTTATTTCAAAGCAATGTTCACAGGTGGATTGAAAGAATGTGAGATGTCACGCG
TTAGACTTCAAGGTGTTTGTCCAACATCAATGGCAAAAATTATCACATTTATGTACACAG
GAAAGATTCATGTGTCAGAAGTGACTGTTTGTCAGTTATTACCTGCTGCTACAATGTTTC
AAGTTCCCAATGTGATAGAAGCATGTTGTGCTTTTCTAGAACGTCAATTAGATCCAACTA
ACGCAATAGGAATTGCAAATTTTGCCGAACAACATGGTTGCGCAATTCTACGGCAAAAAG
CTAACCAATTTATTGAGAGACATTTTACTCAGATTTGTCAAGAGGAAGAATTTTTACAAC
TTTCAGCAATGCAGCTTGTTAATCTAATAAGAAAAGATGAGCTGAATGTACAGGATGAAA
GAGAAGTTTATAATGCTGTTTTAAAATGGGTGAAATATGATGAAGATAATAGATATCCAA
AGATGGAACATATACTCTATGCAGTACGATGTCAATTCCTTACACCAAAATTCTTAAAAG
AGCAAATGAAGAACTGTGATGTTTTGAAAAAAGTGCCAGCGTGCCGTGAGTATTTGGCAA
AAATCTTCAAGGACCTTACATTACACAAGCGTCCAATTGTAAAAGAACGAAAACCAAATA
CAACTAGAATGATTTTTGTCGCTGGTGGCTATTTTCAACACTCATTAGACATACTCGAAG
GCTATAATGTAGATGATAGAACGTGGACAACACTTCCAAAGTTAACAGTGCCGCGTTCAG
GTTTAGGTGCTGCATTTTTGAAAGGAACTTTTTATGCAGTAGGTGGCAGAAATAATGCTC
CTGGAGCGTCATATGATTCGGACTGGGTAGATAGATATGACCCAATAACAGAGCAATGGA
GACCGTGTGCGCCCATGAGTGTACCTAGAAATCGAGTAGGTGTTGCAACAATGGATGATT
TTCTTTATGCTGTTGGTGGCTCATCTGGCTCGGAATATCATAATTCTGTTGAATATTTTG
ATCCTGAACAAGATAGATGGTTTGTTATTGCACCAATGCGCTCAAAAAGATTGGCTGTTG
GTGTTGCTGTCGTAAATAGATTGCTCTATGCTATAGGTGGCTTTGATGGTGAAAATAGAT
TAGCTTCCATGGAATGTTATCATCCAGAAAATAATGAATGGACAGATATGCCACCAATGA
AATATCCACGTTCTGGGGCTGGCGTTGCTGTTCTCAATCAATACATTTATGTAGTTGGTG
GTTTTGACGGCACAAGACAGTTAGCATCAGTTGAGAGATTTGATACAGATAATAAAACAT
GGGAGATTGTTACACCAATGAAAACATCACGAAGTGCATTATCAGTTAATGTGATTGATG
GAAAATTATACGCTATGGGTGGATATGACGGCACACATTTTCTATCAAATGTTGAAGTCT
ATAATCCAGTAGATGATGTTTGGGAAGATGGAATACCATTGACATCAGGTCGTTCAGGAT
TGGCTTCAGCTGTGATTTATCAACCATCTTGTCCTCAAACATATTCCCAGGATTCATCAA
TAATTCAACACTCTGCCAATCGAGAATATGATGATAATGGAAAATCATCAGACATTCAAG
GAGGTAGTGGAAATTCTTCTATAAATTTTGGTTACTCAAGTAATGTTAATCAGAGAGGCT
CATGTGGTCAAGGTAGTGGTGGTCTAAGAGATCAATCTGATCTAATAAACTGTGATGATG
AAGAATGTGAAAAAAGTCCAGTAAAAAAGGATAAAAATAATACATGTATATTTTTACGTA
TGCATTCGAGATTTAAATGTAATCGCAGCAACAATAACGAGACTAGAAAAGATAAATTCA
TTAATTCAACTACAATTAATTATCATGAGCATCAAAGCAAATGTAATGGTTTAATTAAAA
AGCATTCAAAATGCAAAGTCAATCCGTGTCCTATTCAACGGTTAACGCAAAAAATTCAAC
ATTTTGTATCAAATCGACGAAAATATTGTGATTATCAAAGCAGACTTAAAGAAAGTGAAG
AAAATTAA

>g2670.t2 Gene=g2670 Length=756
MDTTDDDDILMTASSSPPQSKSSDDLGDMTFCMSNYAKEVLRMMYMMRQHHMLTDCVLEV
DNELFHVHKVVLSSASPYFKAMFTGGLKECEMSRVRLQGVCPTSMAKIITFMYTGKIHVS
EVTVCQLLPAATMFQVPNVIEACCAFLERQLDPTNAIGIANFAEQHGCAILRQKANQFIE
RHFTQICQEEEFLQLSAMQLVNLIRKDELNVQDEREVYNAVLKWVKYDEDNRYPKMEHIL
YAVRCQFLTPKFLKEQMKNCDVLKKVPACREYLAKIFKDLTLHKRPIVKERKPNTTRMIF
VAGGYFQHSLDILEGYNVDDRTWTTLPKLTVPRSGLGAAFLKGTFYAVGGRNNAPGASYD
SDWVDRYDPITEQWRPCAPMSVPRNRVGVATMDDFLYAVGGSSGSEYHNSVEYFDPEQDR
WFVIAPMRSKRLAVGVAVVNRLLYAIGGFDGENRLASMECYHPENNEWTDMPPMKYPRSG
AGVAVLNQYIYVVGGFDGTRQLASVERFDTDNKTWEIVTPMKTSRSALSVNVIDGKLYAM
GGYDGTHFLSNVEVYNPVDDVWEDGIPLTSGRSGLASAVIYQPSCPQTYSQDSSIIQHSA
NREYDDNGKSSDIQGGSGNSSINFGYSSNVNQRGSCGQGSGGLRDQSDLINCDDEECEKS
PVKKDKNNTCIFLRMHSRFKCNRSNNNETRKDKFINSTTINYHEHQSKCNGLIKKHSKCK
VNPCPIQRLTQKIQHFVSNRRKYCDYQSRLKESEEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g2670.t2 CDD cd18458 BACK_KLHL19_KEAP1 150 240 4.66651E-50
17 g2670.t2 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 22 152 6.9E-39
15 g2670.t2 Gene3D G3DSA:1.25.40.420 - 153 274 2.5E-37
16 g2670.t2 Gene3D G3DSA:2.120.10.80 - 282 595 1.1E-115
27 g2670.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 24 -
28 g2670.t2 MobiDBLite mobidb-lite consensus disorder prediction 8 24 -
8 g2670.t2 PANTHER PTHR24412 KELCH PROTEIN 22 575 9.2E-238
9 g2670.t2 PANTHER PTHR24412:SF401 FI11917P 22 575 9.2E-238
12 g2670.t2 PRINTS PR00501 Kelch repeat signature 440 453 6.9E-6
10 g2670.t2 PRINTS PR00501 Kelch repeat signature 457 471 6.9E-6
11 g2670.t2 PRINTS PR00501 Kelch repeat signature 472 484 6.9E-6
7 g2670.t2 Pfam PF00651 BTB/POZ domain 46 150 1.0E-27
1 g2670.t2 Pfam PF07707 BTB And C-terminal Kelch 157 257 2.6E-33
3 g2670.t2 Pfam PF01344 Kelch motif 332 381 5.6E-11
6 g2670.t2 Pfam PF01344 Kelch motif 383 428 4.2E-11
4 g2670.t2 Pfam PF01344 Kelch motif 432 474 7.2E-15
5 g2670.t2 Pfam PF01344 Kelch motif 477 521 1.0E-15
2 g2670.t2 Pfam PF01344 Kelch motif 525 563 4.0E-11
29 g2670.t2 ProSiteProfiles PS50097 BTB domain profile. 54 121 20.106
19 g2670.t2 SMART SM00225 BTB_4 54 151 9.6E-31
20 g2670.t2 SMART SM00875 BACK_2 156 258 1.1E-35
23 g2670.t2 SMART SM00612 kelc_smart 298 343 8.7E-6
21 g2670.t2 SMART SM00612 kelc_smart 344 394 6.4E-9
26 g2670.t2 SMART SM00612 kelc_smart 395 441 1.1E-12
24 g2670.t2 SMART SM00612 kelc_smart 442 488 7.0E-19
22 g2670.t2 SMART SM00612 kelc_smart 489 535 3.9E-15
25 g2670.t2 SMART SM00612 kelc_smart 536 582 3.5E-11
14 g2670.t2 SUPERFAMILY SSF54695 POZ domain 30 149 1.04E-34
13 g2670.t2 SUPERFAMILY SSF117281 Kelch motif 298 579 5.89E-79

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values