Gene loci information

Transcript annotation

  • This transcript has been annotated as Kelch-like ECH-associated protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2670 g2670.t3 TSS g2670.t3 19485814 19485814
chr_3 g2670 g2670.t3 isoform g2670.t3 19485815 19487738
chr_3 g2670 g2670.t3 exon g2670.t3.exon1 19485815 19485976
chr_3 g2670 g2670.t3 cds g2670.t3.CDS1 19485830 19485976
chr_3 g2670 g2670.t3 exon g2670.t3.exon2 19486038 19486130
chr_3 g2670 g2670.t3 cds g2670.t3.CDS2 19486038 19486130
chr_3 g2670 g2670.t3 exon g2670.t3.exon3 19486188 19486705
chr_3 g2670 g2670.t3 cds g2670.t3.CDS3 19486188 19486705
chr_3 g2670 g2670.t3 exon g2670.t3.exon4 19486781 19487119
chr_3 g2670 g2670.t3 cds g2670.t3.CDS4 19486781 19487119
chr_3 g2670 g2670.t3 exon g2670.t3.exon5 19487233 19487373
chr_3 g2670 g2670.t3 cds g2670.t3.CDS5 19487233 19487373
chr_3 g2670 g2670.t3 exon g2670.t3.exon6 19487438 19487525
chr_3 g2670 g2670.t3 cds g2670.t3.CDS6 19487438 19487525
chr_3 g2670 g2670.t3 exon g2670.t3.exon7 19487601 19487738
chr_3 g2670 g2670.t3 cds g2670.t3.CDS7 19487601 19487738
chr_3 g2670 g2670.t3 TTS g2670.t3 19488383 19488383

Sequences

>g2670.t3 Gene=g2670 Length=1479
TATTCAGCGGACACAATGGATACGACAGATGATGATGACATATTAATGACTGCATCGTCG
TCACCACCGCAATCAAAATCGTCAGATGATCTCGGCGACATGACATTTTGCATGTCAAAT
TATGCGAAAGAAGTCCTGAGAATGATGTACATGATGCGACAGCATCACATGCTCACCGAT
TGTGTTCTTGAAGTAGACAATGAGCTGTTTCATGTTCATAAAGTTGTATTATCATCAGCT
AGTCCTTATTTCAAAGCAATGTTCACAGGTGGATTGAAAGAATGTGAGATGTCACGCGTT
AGACTTCAAGGTGTTTGTCCAACATCAATGGCAAAAATTATCACATTTATGTACACAGGA
AAGATTCATGTGTCAGAAGTGACTGTTTGTCAGTTATTACCTGCTGCTACAATGTTTCAA
GTTCCCAATGTGATAGAAGCATGTTGTGCTTTTCTAGAACGTCAATTAGATCCAACTAAC
GCAATAGGAATTGCAAATTTTGCCGAACAACATGGTTGCGCAATTCTACGGCAAAAAGCT
AACCAATTTATTGAGAGACATTTTACTCAGATTTGTCAAGAGGAAGAATTTTTACAACTT
TCAGCAATGCAGCTTGTTAATCTAATAAGAAAAGATGAGCTGAATGTACAGGATGAAAGA
GAAGTTTATAATGCTGTTTTAAAATGGGTGAAATATGATGAAGATAATAGATATCCAAAG
ATGGAACATATACTCTATGCAGTACGATGTCAATTCCTTACACCAAAATTCTTAAAAGAG
CAAATGAAGAACTGTGATGTTTTGAAAAAAGTGCCAGCGTGCCGTGAGTATTTGGCAAAA
ATCTTCAAGGACCTTACATTACACAAGCGTCCAATTGTAAAAGAACGAAAACCAAATACA
ACTAGAATGATTTTTGTCGCTGGTGGCTATTTTCAACACTCATTAGACATACTCGAAGGC
TATAATGTAGATGATAGAACGTGGACAACACTTCCAAAGTTAACAGTGCCGCGTTCAGGT
TTAGGTGCTGCATTTTTGAAAGGAACTTTTTATGCAGTAGGTGGCAGAAATAATGCTCCT
GGAGCGTCATATGATTCGGACTGGGTAGATAGATATGACCCAATAACAGAGCAATGGAGA
CCGTGTGCGCCCATGAGTGTACCTAGAAATCGAGTAGGTGTTGCAACAATGGATGATTTT
CTTTATGCTGTTGGTGGCTCATCTGGCTCGGAATATCATAATTCTGTTGAATATTTTGAT
CCTGAACAAGATAGATGGTTTGTTATTGCACCAATGCGCTCAAAAAGATTGGCTGTTGGT
GTTGCTGTCGTAAATAGATTGCTCTATGCTATAGGTGGCTTTGATGGTGAAAATAGATTA
GCTTCCATGGAATGTTATCATCCAGAAAATAATGAATGGACAGATATGCCACCAATGAAA
TATCCACGTTCTGGGGCTGGCGTTGCTGTTCTCAATCAA

>g2670.t3 Gene=g2670 Length=488
MDTTDDDDILMTASSSPPQSKSSDDLGDMTFCMSNYAKEVLRMMYMMRQHHMLTDCVLEV
DNELFHVHKVVLSSASPYFKAMFTGGLKECEMSRVRLQGVCPTSMAKIITFMYTGKIHVS
EVTVCQLLPAATMFQVPNVIEACCAFLERQLDPTNAIGIANFAEQHGCAILRQKANQFIE
RHFTQICQEEEFLQLSAMQLVNLIRKDELNVQDEREVYNAVLKWVKYDEDNRYPKMEHIL
YAVRCQFLTPKFLKEQMKNCDVLKKVPACREYLAKIFKDLTLHKRPIVKERKPNTTRMIF
VAGGYFQHSLDILEGYNVDDRTWTTLPKLTVPRSGLGAAFLKGTFYAVGGRNNAPGASYD
SDWVDRYDPITEQWRPCAPMSVPRNRVGVATMDDFLYAVGGSSGSEYHNSVEYFDPEQDR
WFVIAPMRSKRLAVGVAVVNRLLYAIGGFDGENRLASMECYHPENNEWTDMPPMKYPRSG
AGVAVLNQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g2670.t3 CDD cd18458 BACK_KLHL19_KEAP1 150 240 9.65597E-52
15 g2670.t3 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 22 152 3.3E-39
13 g2670.t3 Gene3D G3DSA:1.25.40.420 - 153 274 1.2E-37
14 g2670.t3 Gene3D G3DSA:2.120.10.80 - 282 488 5.7E-76
23 g2670.t3 MobiDBLite mobidb-lite consensus disorder prediction 1 24 -
24 g2670.t3 MobiDBLite mobidb-lite consensus disorder prediction 8 24 -
6 g2670.t3 PANTHER PTHR24412 KELCH PROTEIN 22 488 3.7E-205
7 g2670.t3 PANTHER PTHR24412:SF401 FI11917P 22 488 3.7E-205
10 g2670.t3 PRINTS PR00501 Kelch repeat signature 440 453 2.1E-6
8 g2670.t3 PRINTS PR00501 Kelch repeat signature 457 471 2.1E-6
9 g2670.t3 PRINTS PR00501 Kelch repeat signature 472 484 2.1E-6
5 g2670.t3 Pfam PF00651 BTB/POZ domain 46 150 8.0E-28
1 g2670.t3 Pfam PF07707 BTB And C-terminal Kelch 157 257 1.3E-33
2 g2670.t3 Pfam PF01344 Kelch motif 332 381 3.2E-11
4 g2670.t3 Pfam PF01344 Kelch motif 383 428 2.4E-11
3 g2670.t3 Pfam PF01344 Kelch motif 432 474 4.1E-15
25 g2670.t3 ProSiteProfiles PS50097 BTB domain profile. 54 121 20.106
17 g2670.t3 SMART SM00225 BTB_4 54 151 9.6E-31
18 g2670.t3 SMART SM00875 BACK_2 156 258 1.1E-35
20 g2670.t3 SMART SM00612 kelc_smart 298 343 8.7E-6
19 g2670.t3 SMART SM00612 kelc_smart 344 394 6.4E-9
22 g2670.t3 SMART SM00612 kelc_smart 395 441 1.1E-12
21 g2670.t3 SMART SM00612 kelc_smart 442 488 7.0E-19
12 g2670.t3 SUPERFAMILY SSF54695 POZ domain 30 149 5.1E-35
11 g2670.t3 SUPERFAMILY SSF117281 Kelch motif 298 487 8.11E-53

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values