General information for g2679.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family G member 1.
Parent gene
- The parent gene g2679 is located on chr_3: 19692606..19693771 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2679 | g2679.t1 | TSS | g2679.t1 | 19689909 | 19689909 |
| chr_3 | g2679 | g2679.t1 | isoform | g2679.t1 | 19689985 | 19692606 |
| chr_3 | g2679 | g2679.t1 | exon | g2679.t1.exon1 | 19689985 | 19691427 |
| chr_3 | g2679 | g2679.t1 | cds | g2679.t1.CDS1 | 19689985 | 19691427 |
| chr_3 | g2679 | g2679.t1 | exon | g2679.t1.exon2 | 19692213 | 19692244 |
| chr_3 | g2679 | g2679.t1 | cds | g2679.t1.CDS2 | 19692213 | 19692244 |
| chr_3 | g2679 | g2679.t1 | exon | g2679.t1.exon3 | 19692297 | 19692606 |
| chr_3 | g2679 | g2679.t1 | cds | g2679.t1.CDS3 | 19692297 | 19692606 |
| chr_3 | g2679 | g2679.t1 | TTS | g2679.t1 | NA | NA |
Sequences
>g2679.t1 Gene=g2679 Length=1785
ATGATGAACAATCTTAGTATTAAATTTGATAATTTAACATACCGTGCGCGAAGGTATGGT
TTCTTTAAAAAGGAAGAAAAGACAATTTTAAATGGAATAAGTGGTGAATTTCGTGAACAT
GAATTAAGTGCTATTCTGGGGCCATCGGGATGTGGAAAATCATCGCTGCTTAATATTTTG
TCTACTTTCATGACTGATGGAATCTCTGGGTCAATTACGATTAACAATGAACATTGGAAT
AAGACAAAATTTAAGAAAAAGTTTGCTTATATCATGCAAGAAGAGAATTTGCATGCTGTT
TTAACTGTCAAAGAAGCAATGAATTACTCAATTAAACTTAAAACAGGCAAATCATTGACC
GAGAAGCAGCAGCAAGAAAAAATTATTTCAATTTTGGACACACTTAAATTGAGTAATCGC
TTGAACACTTATACGCAGCACTTAAGTGGCGGTCAGCAAAAAAGATTATCGATTGCGCTA
GAATTAGTTGATGATCCACAAGTACTTTTTCTAGATGAATGCACAACAGGCCTTGATTCT
GTAGCATCAACGCAGTGTATTCAATTTCTAAAAAAACTTTCCACTCAAGGAAGAACCGTC
ATTTGCACAATTCACACACCAAGTGCATTAATGTTTGAAATGTTCGATCATATTTACGCA
ATGGCGAGGGGTGAATGTATCTATCAAGGCTCGAGTCAAAATCTCGTTCCATTCTTGAAA
GAACTTGATCTTATCTGTCCAAGCACTTACAATCCCGCTGATTTTCTCCTTGAAATTGCC
AATAATGATTATGGAGCACAAAATTCACGTCTAACAGAAACGATAGAAAATGGAAAAAAT
GAATTTTATCGTAAACCATCAAATTGCTTAAACAACAATAATGATGACGTAAATTTTCAA
AAATTTACCAATGGAACGACCTTGAGTGAAGAATCAAAATTATCATCGCCCTCATCATTT
ATTTACCAATTAGCTTTGCTTGTTTCAAGAAACTATATAATTTCGCACCGAAATATAACC
TTAATTATTCAACGTTTATTAATCTCATTTGTGGTTGGCTTAATGGTAGGTGGAATGTAT
TTAGGCATTGGCCAAGAAGGATCACACACTTTCAGCACATTCAAATACATTTTTGTATCA
GCATTCTTTCTACTTTACATCTCATACTATTCACAACAAACATCATTCCCTTTAGAATTG
CCGATTGTGAAACGTGAAGTTTTCAACAGACATTATAGTTCTTCAGCATACTATCTAGCA
TTGTCGCTTACAGACATTCCGATGACTATAATCTGTACATTGATTTATCTACTCATTACA
TACTTTATGACAGATCAACCTCATGACGTTGAACGTGCTACTGCATTCTTTTCAATCGGC
TTATTAACTAGTTTCGTAGCACAAGGATTTGGACATTTTGCTTCATCAATGTTTGAGCTT
CAGGGAACACTAACATTTGCTGCAATTTTTCTTCCTTTATATGGAATATTTTCCGGAATT
TTCATTTTAATGAAAGATGCTCATTGGCTTTTCCATTGGATTTTTCAAATATCTTTCATC
AAATATTCATTAGATGCTGGCGCTACTGTTATACTAGGCTGGAATCGAGAAAAGCTACAT
TGTTCTGAAGATTATTGTCATTATCAGATACCGAAGAAGTTTTTAAACACTATTGATTTA
AATCAGAATCTTTGGTTGTCAGTACAAGCTCTCATAATATTTTTGATTGTTTTCCGTTTA
ACAGCATTTATTATCATGAGATATCGTTTGAAAAATTTCAAATAA
>g2679.t1 Gene=g2679 Length=594
MMNNLSIKFDNLTYRARRYGFFKKEEKTILNGISGEFREHELSAILGPSGCGKSSLLNIL
STFMTDGISGSITINNEHWNKTKFKKKFAYIMQEENLHAVLTVKEAMNYSIKLKTGKSLT
EKQQQEKIISILDTLKLSNRLNTYTQHLSGGQQKRLSIALELVDDPQVLFLDECTTGLDS
VASTQCIQFLKKLSTQGRTVICTIHTPSALMFEMFDHIYAMARGECIYQGSSQNLVPFLK
ELDLICPSTYNPADFLLEIANNDYGAQNSRLTETIENGKNEFYRKPSNCLNNNNDDVNFQ
KFTNGTTLSEESKLSSPSSFIYQLALLVSRNYIISHRNITLIIQRLLISFVVGLMVGGMY
LGIGQEGSHTFSTFKYIFVSAFFLLYISYYSQQTSFPLELPIVKREVFNRHYSSSAYYLA
LSLTDIPMTIICTLIYLLITYFMTDQPHDVERATAFFSIGLLTSFVAQGFGHFASSMFEL
QGTLTFAAIFLPLYGIFSGIFILMKDAHWLFHWIFQISFIKYSLDAGATVILGWNREKLH
CSEDYCHYQIPKKFLNTIDLNQNLWLSVQALIIFLIVFRLTAFIIMRYRLKNFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2679.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 241 | 7.7E-56 |
| 4 | g2679.t1 | PANTHER | PTHR48041:SF78 | ABC TRANSPORTER EXPRESSED IN TRACHEA, ISOFORM A-RELATED | 4 | 589 | 5.6E-177 |
| 5 | g2679.t1 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 4 | 589 | 5.6E-177 |
| 3 | g2679.t1 | Pfam | PF00005 | ABC transporter | 30 | 175 | 2.3E-27 |
| 1 | g2679.t1 | Pfam | PF19055 | ABC-2 type transporter | 205 | 261 | 1.3E-5 |
| 2 | g2679.t1 | Pfam | PF01061 | ABC-2 type transporter | 322 | 526 | 1.2E-24 |
| 14 | g2679.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 341 | - |
| 17 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 361 | - |
| 8 | g2679.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 362 | 372 | - |
| 16 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 373 | 391 | - |
| 13 | g2679.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 392 | 415 | - |
| 21 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 416 | 443 | - |
| 9 | g2679.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 444 | 454 | - |
| 19 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 455 | 478 | - |
| 12 | g2679.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 479 | 483 | - |
| 22 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 484 | 503 | - |
| 11 | g2679.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 504 | 509 | - |
| 20 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 510 | 534 | - |
| 15 | g2679.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 535 | 563 | - |
| 18 | g2679.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 564 | 586 | - |
| 10 | g2679.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 587 | 594 | - |
| 30 | g2679.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 148 | 162 | - |
| 32 | g2679.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 7 | 248 | 19.428 |
| 31 | g2679.t1 | SMART | SM00382 | AAA_5 | 39 | 225 | 4.3E-12 |
| 6 | g2679.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 7 | 246 | 1.36E-47 |
| 27 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 364 | - |
| 26 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 371 | 390 | - |
| 23 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 417 | 439 | - |
| 24 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 452 | 474 | - |
| 29 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 484 | 503 | - |
| 28 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 510 | 532 | - |
| 25 | g2679.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 564 | 586 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
