General information for g2684.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Origin recognition complex subunit 5.
Parent gene
- The parent gene g2684 is located on chr_3: 19711137..19714314 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2684 | g2684.t6 | TSS | g2684.t6 | 19709684 | 19709684 |
| chr_3 | g2684 | g2684.t6 | isoform | g2684.t6 | 19709712 | 19710800 |
| chr_3 | g2684 | g2684.t6 | exon | g2684.t6.exon1 | 19709712 | 19710800 |
| chr_3 | g2684 | g2684.t6 | cds | g2684.t6.CDS1 | 19709712 | 19710800 |
| chr_3 | g2684 | g2684.t6 | TTS | g2684.t6 | NA | NA |
Sequences
>g2684.t6 Gene=g2684 Length=1089
ATGAACAAAATAAATAAAGTTGTTGATAAATTGATAAATTTGTATGGAAATAATGAACCA
TTTCCAAACTGTTGTTATTTATACGGACAAAAATCTGTTGGTAAATCAATGTGCATTGAA
AATTTCTTGGAAAATGCTAGCAATTATATAGAATCAGTGATTATTTATGCAAATGAATGC
TACTCAAATAAAATTTTGTTTGAAAACATCATCAATAAATTTAACAATCATGAATTGAAT
GAAGCTAATCAATTTGAATCATTCGCAAAAATCGATACAATGGAGGATTTTCTTAATCAA
ATTTCAATGTTGGATGTTTCTAAGTCATACATCATTGTTATTGAAAAAGCAGAAAAACTT
CGCGATATGGACATCAATATTATAGCTACATTCTCAAAATTACAAGAATTTACAGGTTTA
AATATATCATGTATACTTGTTTCACACATTGCTTATGAGAAAATGTCCGGTGATGAAATT
ATTGAAATACACGTTCCAGATTATAGCAAAAATGATATAACAGACATTCTCTTGAATCGA
TACGAAGAAGTGCATGAAGAGATTATCAAAAATATAAAGAAAAGTAATATGAAAAATGAA
GAAATCGATAAGCAACTAGAAGCTGTTACTACTATGAATGAAGAATTTTACAAAAACTAT
CTAAGCGTATTTTTGAATGTATTCTACAAAGCCTGTCGTGACTTAAAAGAGTTAAGTTTC
TTATGTGACAAATGTTATCCATCTTATTACAATCCAGTTTTAACTGGTGAGATTAAATCA
ACTGATGTTACAAACTTGTGGAGAAATGTGACAAAAACTCTTAAAATGGCACTCAATACA
ATATATATGAGAGTTGGTAATTTATCTGCAATAGAACTTAAAAGTACAGAAGAAAATGAT
GAAAATACCTTTGAGATTCATCAAAGAACAAACACTATCAAAACGTTTGCACAAATGCTC
GAGTTACCTTTTTATGCTAAATATCTTCTCATTGCTAGTTTCTTAGCAAGTCACAATGAT
GCCAAAAGTGACAAAAAATTATTTATGAAGAACCATGGAAAAGAACGAAAAAGAAAGCAA
CCACCAAAA
>g2684.t6 Gene=g2684 Length=363
MNKINKVVDKLINLYGNNEPFPNCCYLYGQKSVGKSMCIENFLENASNYIESVIIYANEC
YSNKILFENIINKFNNHELNEANQFESFAKIDTMEDFLNQISMLDVSKSYIIVIEKAEKL
RDMDINIIATFSKLQEFTGLNISCILVSHIAYEKMSGDEIIEIHVPDYSKNDITDILLNR
YEEVHEEIIKNIKKSNMKNEEIDKQLEAVTTMNEEFYKNYLSVFLNVFYKACRDLKELSF
LCDKCYPSYYNPVLTGEIKSTDVTNLWRNVTKTLKMALNTIYMRVGNLSAIELKSTEEND
ENTFEIHQRTNTIKTFAQMLELPFYAKYLLIASFLASHNDAKSDKKLFMKNHGKERKRKQ
PPK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2684.t6 | Coils | Coil | Coil | 178 | 198 | - |
| 4 | g2684.t6 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 161 | 4.3E-11 |
| 2 | g2684.t6 | PANTHER | PTHR12705 | ORIGIN RECOGNITION COMPLEX SUBUNIT 5 | 8 | 360 | 2.5E-71 |
| 1 | g2684.t6 | Pfam | PF14630 | Origin recognition complex (ORC) subunit 5 C-terminus | 163 | 359 | 7.0E-37 |
| 3 | g2684.t6 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 6 | 184 | 2.03E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0000808 | origin recognition complex | CC |
| GO:0006260 | DNA replication | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
