General information for g2685.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Endoplasmic reticulum chaperone BiP.
Parent gene
- The parent gene g2685 is located on chr_3: 19712637..19714329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2685 | g2685.t14 | isoform | g2685.t14 | 19712637 | 19713317 |
| chr_3 | g2685 | g2685.t14 | exon | g2685.t14.exon1 | 19712637 | 19713317 |
| chr_3 | g2685 | g2685.t14 | cds | g2685.t14.CDS1 | 19712638 | 19713045 |
| chr_3 | g2685 | g2685.t14 | TSS | g2685.t14 | 19714111 | 19714111 |
| chr_3 | g2685 | g2685.t14 | TTS | g2685.t14 | NA | NA |
Sequences
>g2685.t14 Gene=g2685 Length=681
ATCAAGGAAATCGTATCACACCTTCATATGTGGCATTCACTTCTGAAGGAGAACGATTGA
TTGGTGATGCAGCTAAAAATCAGCTCACAACAAATCCAGAAAATACTGTGTTCGATGCTA
AACGTCTAATTGGTCGTGAATGGAGTGACTCAGCTGTTCAACATGATATCAAATTTTTCC
CATTCAAAGTTGTCGAGAAGAACTCAAAGCCACACATTGAAGTGAAAACTCAACAAGGCA
ACAAAGTCTTCACACCTGAAGAAATTTCAGCTATGGTTCTTGGAAAAATGAAAGAAACTG
CTGAGGCATATTTGGGCAAAAAAGTTACGCACGCTGTTGTCACAGTTCCAGCTTATTTCA
ATGATGCTCAACGTCAAGCCACAAAAGATGCTGGTATCATCTCTGGATTGAATGTTATGC
GTATTATTAATGAACCTACTGCAGCAGCTATTGCATATGGGCTTGATAAAAAAGACGGCG
AAAAGAATGTTTTAGTATTCGATCTTGGTGGTGGTACATTCGATGTCTCGCTTCTTACAA
TTGATAACGGTGTTTTCGAAGTTGTTGCCACAAATGGTGATACTCACTTAGGAGGTGAAG
ATTTTGATCAACGTGTGATGGATCATTTCATTAAATTGTACAAGAAGAAGAAGGGCAAGG
ACATTCGTAAAGATAATCGCG
>g2685.t14 Gene=g2685 Length=136
MVLGKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGIISGLNVMRIINEPTAAAI
AYGLDKKDGEKNVLVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMDHFI
KLYKKKKGKDIRKDNR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2685.t14 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 73 | 1.0E-30 |
| 8 | g2685.t14 | Gene3D | G3DSA:3.30.420.40 | - | 74 | 132 | 8.0E-24 |
| 2 | g2685.t14 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 136 | 6.7E-83 |
| 3 | g2685.t14 | PANTHER | PTHR19375:SF380 | ENDOPLASMIC RETICULUM CHAPERONE BIP | 1 | 136 | 6.7E-83 |
| 4 | g2685.t14 | PRINTS | PR00301 | 70kDa heat shock protein signature | 21 | 41 | 5.7E-16 |
| 5 | g2685.t14 | PRINTS | PR00301 | 70kDa heat shock protein signature | 81 | 91 | 5.7E-16 |
| 1 | g2685.t14 | Pfam | PF00012 | Hsp70 protein | 1 | 136 | 1.6E-74 |
| 7 | g2685.t14 | ProSitePatterns | PS00329 | Heat shock hsp70 proteins family signature 2. | 75 | 88 | - |
| 6 | g2685.t14 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 8 | 125 | 2.32E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
