Gene loci information

Transcript annotation

  • This transcript has been annotated as Potassium channel subfamily K member 9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2689 g2689.t2 isoform g2689.t2 19721406 19723051
chr_3 g2689 g2689.t2 exon g2689.t2.exon1 19721406 19721485
chr_3 g2689 g2689.t2 exon g2689.t2.exon2 19721551 19722011
chr_3 g2689 g2689.t2 cds g2689.t2.CDS1 19721952 19722011
chr_3 g2689 g2689.t2 exon g2689.t2.exon3 19722083 19722464
chr_3 g2689 g2689.t2 cds g2689.t2.CDS2 19722083 19722464
chr_3 g2689 g2689.t2 exon g2689.t2.exon4 19722524 19722668
chr_3 g2689 g2689.t2 cds g2689.t2.CDS3 19722524 19722668
chr_3 g2689 g2689.t2 exon g2689.t2.exon5 19722793 19723051
chr_3 g2689 g2689.t2 cds g2689.t2.CDS4 19722793 19723051
chr_3 g2689 g2689.t2 TSS g2689.t2 NA NA
chr_3 g2689 g2689.t2 TTS g2689.t2 NA NA

Sequences

>g2689.t2 Gene=g2689 Length=1327
ACTTATACATTTAAAAAAATACCTAAAAGTAGCTGATAATTTTTATTAAAATATAATTGT
ACACATCATCATCTCTGTCTCAATTAATCAAGCAAGAAGAAGTAAAAAGAAAAAACTGAT
GATGATAAAAGATTAAACATTTATTGGCTGCTAACCTATATCAAGAGATTTTCGAAAGCA
AAGAAAACATACAAAGAATTTTAATTGCTTAGTAACTAATTTTAAATTTGATTGAAAGAA
AACTTGTGAAATTGTAAGAAACATAAAAGAAGAACGAATGGTGACTGACAGCGGTGATCC
CTCATATTTGTGTACTCTTAAGATGAAAAGGCAAAACATTCGAACACTTTCTTTGGTTGT
TTGCACTTTCACATATCTTCTTGTTGGTGCAGCGGTGTTTGACTGACTCGAGTCGGAAAA
TGAGAGCATTAGATGGGAATTTCTTAAATCAGCGAAAGAAAATTTTCATAAAAAATACCA
CATGAGTGATGAGGATTATAAGATGCTAGAAGTGGTCATAATAGAAAACAAACCACATAA
AGCTGGTCCCCAATGGAAATTTCTAGGTGCGTTCTACTTTGCTACAGTGGTTTTAGCAAT
GATTGGATATGGTCATTCGACACCAAATACTAATGCGGGAAAAGCTTTTTGTATGATTTA
TGCAATGGTAGGCATTCCGTTAGGTCTCGTAATGTTTCAATCAATCGGTGAACGTTTGAA
TAAATTTGCCTCAGTGATTATTAGACGATTTAAGATTTTCATGAAATGCTCTCAAACAGA
AGCAACAGAGATTAATTTAATGGCAGCAACAGGATTTTTGAGTTCAATTATTATTTTAAC
AGGAGCAGCTGTATTTAGTAAATATGAAAATTGGTCTTATTTCGATAGTTTCTATTATTG
CTTCGTTACATTGACTACAATTGGTTTTGGCGATTATGTAGCATTACAAAATGATCGTGC
ACTTCAAAATAATCCTGGTTATGTAGCCTTATCGCTTGTTTTTATTCTCTTTGGTCTCGC
TGTTGTTGCTGCTTCCATAAATTTATTGGTTCTTCGTTTCATGACAATGAATGCTGAAGA
TATGCGAATAGAAAATGAAGAACTTCAGAGACAAGCTATGAAGAACCAAGTCCAAGTAAT
GACATGCGAAGGAGAACGCGATAATATTTCAAATAAACTTATCAACTCTTCAGTCAATGA
GGATCAACAGTCTGTATGTAGTTGTAATTGTATGGGAACAAGCAGTGAAAATGGCCAACT
TATTGACGGTTATCTACCTACTGATCTTGTCACAAGTTCTTTAAGTCTCAAAAGAGCATC
CGTTTAA

>g2689.t2 Gene=g2689 Length=281
MSDEDYKMLEVVIIENKPHKAGPQWKFLGAFYFATVVLAMIGYGHSTPNTNAGKAFCMIY
AMVGIPLGLVMFQSIGERLNKFASVIIRRFKIFMKCSQTEATEINLMAATGFLSSIIILT
GAAVFSKYENWSYFDSFYYCFVTLTTIGFGDYVALQNDRALQNNPGYVALSLVFILFGLA
VVAASINLLVLRFMTMNAEDMRIENEELQRQAMKNQVQVMTCEGERDNISNKLINSSVNE
DQQSVCSCNCMGTSSENGQLIDGYLPTDLVTSSLSLKRASV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g2689.t2 Coils Coil Coil 191 223 -
11 g2689.t2 Gene3D G3DSA:1.10.287.70 - 3 235 8.2E-58
3 g2689.t2 PANTHER PTHR11003 POTASSIUM CHANNEL, SUBFAMILY K 1 263 2.1E-132
4 g2689.t2 PANTHER PTHR11003:SF253 IP11374P 1 263 2.1E-132
24 g2689.t2 PIRSF PIRSF038061 K(+) 1 261 1.2E-78
8 g2689.t2 PRINTS PR01333 Two pore domain K+ channel signature 36 64 3.2E-16
5 g2689.t2 PRINTS PR01095 TASK K+ channel signature 69 85 3.4E-11
7 g2689.t2 PRINTS PR01333 Two pore domain K+ channel signature 145 154 3.2E-16
6 g2689.t2 PRINTS PR01095 TASK K+ channel signature 170 184 3.4E-11
1 g2689.t2 Pfam PF07885 Ion channel 23 79 2.6E-16
2 g2689.t2 Pfam PF07885 Ion channel 116 194 1.7E-17
18 g2689.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 24 -
23 g2689.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 25 43 -
13 g2689.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 44 54 -
21 g2689.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 55 75 -
17 g2689.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 76 103 -
22 g2689.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 104 125 -
14 g2689.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 126 136 -
20 g2689.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 137 155 -
16 g2689.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 156 166 -
19 g2689.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 167 191 -
15 g2689.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 192 281 -
10 g2689.t2 SUPERFAMILY SSF81324 Voltage-gated potassium channels 21 90 4.19E-17
9 g2689.t2 SUPERFAMILY SSF81324 Voltage-gated potassium channels 102 234 2.49E-24
28 g2689.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 27 44 -
26 g2689.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 75 -
25 g2689.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 103 125 -
29 g2689.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 137 154 -
27 g2689.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 169 191 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005267 potassium channel activity MF
GO:0071805 potassium ion transmembrane transport BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values