Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Potassium channel subfamily K member 9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2689 g2689.t3 isoform g2689.t3 19721553 19722463
chr_3 g2689 g2689.t3 exon g2689.t3.exon1 19721553 19722463
chr_3 g2689 g2689.t3 cds g2689.t3.CDS1 19722140 19722463
chr_3 g2689 g2689.t3 TSS g2689.t3 NA NA
chr_3 g2689 g2689.t3 TTS g2689.t3 NA NA

Sequences

>g2689.t3 Gene=g2689 Length=911
ATTAATCAAGCAAGAAGAAGTAAAAAGAAAAAACTGATGATGATAAAAGATTAAACATTT
ATTGGCTGCTAACCTATATCAAGAGATTTTCGAAAGCAAAGAAAACATACAAAGAATTTT
AATTGCTTAGTAACTAATTTTAAATTTGATTGAAAGAAAACTTGTGAAATTGTAAGAAAC
ATAAAAGAAGAACGAATGGTGACTGACAGCGGTGATCCCTCATATTTGTGTACTCTTAAG
ATGAAAAGGCAAAACATTCGAACACTTTCTTTGGTTGTTTGCACTTTCACATATCTTCTT
GTTGGTGCAGCGGTGTTTGACTGACTCGAGTCGGAAAATGAGAGCATTAGATGGGAATTT
CTTAAATCAGCGAAAGAAAATTTTCATAAAAAATACCACATGAGTGATGAGGATTATAAG
ATGCTAGAAGTGGTCATAATAGAAAACAAACCACATAAAGTAATACATCCTTTATGATTG
TATAAACTATTTCACAATATATTCTCTTTATTACTACTACCTTCTTTCAGGCTGGTCCCC
AATGGAAATTTCTAGGTGCGTTCTACTTTGCTACAGTGGTTTTAGCAATGATTGGATATG
GTCATTCGACACCAAATACTAATGCGGGAAAAGCTTTTTGTATGATTTATGCAATGGTAG
GCATTCCGTTAGGTCTCGTAATGTTTCAATCAATCGGTGAACGTTTGAATAAATTTGCCT
CAGTGATTATTAGACGATTTAAGATTTTCATGAAATGCTCTCAAACAGAAGCAACAGAGA
TTAATTTAATGGCAGCAACAGGATTTTTGAGTTCAATTATTATTTTAACAGGAGCAGCTG
TATTTAGTAAATATGAAAATTGGTCTTATTTCGATAGTTTCTATTATTGCTTCGTTACAT
TGACTACAATT

>g2689.t3 Gene=g2689 Length=108
MIGYGHSTPNTNAGKAFCMIYAMVGIPLGLVMFQSIGERLNKFASVIIRRFKIFMKCSQT
EATEINLMAATGFLSSIIILTGAAVFSKYENWSYFDSFYYCFVTLTTI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2689.t3 Gene3D G3DSA:1.10.287.70 - 1 108 1.9E-33
3 g2689.t3 PANTHER PTHR11003 POTASSIUM CHANNEL, SUBFAMILY K 1 108 1.2E-60
4 g2689.t3 PANTHER PTHR11003:SF253 IP11374P 1 108 1.2E-60
2 g2689.t3 Pfam PF07885 Ion channel 2 40 1.2E-8
1 g2689.t3 Pfam PF07885 Ion channel 77 108 6.8E-7
10 g2689.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
12 g2689.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
9 g2689.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 34 64 -
13 g2689.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 86 -
11 g2689.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 87 108 -
7 g2689.t3 SUPERFAMILY SSF81324 Voltage-gated potassium channels 2 108 1.5E-19
6 g2689.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 15 37 -
5 g2689.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 65 87 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values