Gene loci information

Transcript annotation

  • This transcript has been annotated as Potassium channel subfamily K member 9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2689 g2689.t4 isoform g2689.t4 19721973 19723051
chr_3 g2689 g2689.t4 exon g2689.t4.exon1 19721973 19722464
chr_3 g2689 g2689.t4 cds g2689.t4.CDS1 19722140 19722464
chr_3 g2689 g2689.t4 exon g2689.t4.exon2 19722524 19722668
chr_3 g2689 g2689.t4 cds g2689.t4.CDS2 19722524 19722668
chr_3 g2689 g2689.t4 exon g2689.t4.exon3 19722793 19723051
chr_3 g2689 g2689.t4 cds g2689.t4.CDS3 19722793 19723051
chr_3 g2689 g2689.t4 TSS g2689.t4 NA NA
chr_3 g2689 g2689.t4 TTS g2689.t4 NA NA

Sequences

>g2689.t4 Gene=g2689 Length=896
ATGCTAGAAGTGGTCATAATAGAAAACAAACCACATAAAGTAATACATCCTTTATGATTG
TATAAACTATTTCACAATATATTCTCTTTATTACTACTACCTTCTTTCAGGCTGGTCCCC
AATGGAAATTTCTAGGTGCGTTCTACTTTGCTACAGTGGTTTTAGCAATGATTGGATATG
GTCATTCGACACCAAATACTAATGCGGGAAAAGCTTTTTGTATGATTTATGCAATGGTAG
GCATTCCGTTAGGTCTCGTAATGTTTCAATCAATCGGTGAACGTTTGAATAAATTTGCCT
CAGTGATTATTAGACGATTTAAGATTTTCATGAAATGCTCTCAAACAGAAGCAACAGAGA
TTAATTTAATGGCAGCAACAGGATTTTTGAGTTCAATTATTATTTTAACAGGAGCAGCTG
TATTTAGTAAATATGAAAATTGGTCTTATTTCGATAGTTTCTATTATTGCTTCGTTACAT
TGACTACAATTGGTTTTGGCGATTATGTAGCATTACAAAATGATCGTGCACTTCAAAATA
ATCCTGGTTATGTAGCCTTATCGCTTGTTTTTATTCTCTTTGGTCTCGCTGTTGTTGCTG
CTTCCATAAATTTATTGGTTCTTCGTTTCATGACAATGAATGCTGAAGATATGCGAATAG
AAAATGAAGAACTTCAGAGACAAGCTATGAAGAACCAAGTCCAAGTAATGACATGCGAAG
GAGAACGCGATAATATTTCAAATAAACTTATCAACTCTTCAGTCAATGAGGATCAACAGT
CTGTATGTAGTTGTAATTGTATGGGAACAAGCAGTGAAAATGGCCAACTTATTGACGGTT
ATCTACCTACTGATCTTGTCACAAGTTCTTTAAGTCTCAAAAGAGCATCCGTTTAA

>g2689.t4 Gene=g2689 Length=242
MIGYGHSTPNTNAGKAFCMIYAMVGIPLGLVMFQSIGERLNKFASVIIRRFKIFMKCSQT
EATEINLMAATGFLSSIIILTGAAVFSKYENWSYFDSFYYCFVTLTTIGFGDYVALQNDR
ALQNNPGYVALSLVFILFGLAVVAASINLLVLRFMTMNAEDMRIENEELQRQAMKNQVQV
MTCEGERDNISNKLINSSVNEDQQSVCSCNCMGTSSENGQLIDGYLPTDLVTSSLSLKRA
SV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2689.t4 Coils Coil Coil 152 184 -
8 g2689.t4 Gene3D G3DSA:1.10.287.70 - 1 201 9.2E-49
3 g2689.t4 PANTHER PTHR11003 POTASSIUM CHANNEL, SUBFAMILY K 1 224 5.7E-109
4 g2689.t4 PANTHER PTHR11003:SF253 IP11374P 1 224 5.7E-109
6 g2689.t4 PRINTS PR01095 TASK K+ channel signature 30 46 2.7E-11
5 g2689.t4 PRINTS PR01095 TASK K+ channel signature 131 145 2.7E-11
2 g2689.t4 Pfam PF07885 Ion channel 2 40 5.3E-8
1 g2689.t4 Pfam PF07885 Ion channel 77 155 1.2E-17
12 g2689.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 15 -
17 g2689.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 16 36 -
13 g2689.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 37 64 -
18 g2689.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 86 -
11 g2689.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 87 97 -
16 g2689.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 116 -
14 g2689.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 117 127 -
15 g2689.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 128 152 -
10 g2689.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 153 242 -
7 g2689.t4 SUPERFAMILY SSF81324 Voltage-gated potassium channels 2 155 3.64E-30
20 g2689.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
19 g2689.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 64 86 -
22 g2689.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 98 115 -
21 g2689.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 130 152 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005267 potassium channel activity MF
GO:0071805 potassium ion transmembrane transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed