General information for g2690.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ferritin subunit.
Parent gene
- The parent gene g2690 is located on chr_3: 19723742..19725128 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2690 | g2690.t20 | TTS | g2690.t20 | 19723354 | 19723354 |
| chr_3 | g2690 | g2690.t20 | isoform | g2690.t20 | 19723426 | 19724509 |
| chr_3 | g2690 | g2690.t20 | exon | g2690.t20.exon1 | 19723426 | 19723572 |
| chr_3 | g2690 | g2690.t20 | cds | g2690.t20.CDS1 | 19723426 | 19723572 |
| chr_3 | g2690 | g2690.t20 | exon | g2690.t20.exon2 | 19723635 | 19724152 |
| chr_3 | g2690 | g2690.t20 | cds | g2690.t20.CDS2 | 19723635 | 19724152 |
| chr_3 | g2690 | g2690.t20 | exon | g2690.t20.exon3 | 19724431 | 19724509 |
| chr_3 | g2690 | g2690.t20 | cds | g2690.t20.CDS3 | 19724431 | 19724509 |
| chr_3 | g2690 | g2690.t20 | TSS | g2690.t20 | 19724736 | 19724736 |
Sequences
>g2690.t20 Gene=g2690 Length=744
ATGAACAAGTTTGGAATTTTAGTGGCCTTTGCAGTTTGCTGTTTTGTGTCGGTATCAGCT
GATACATGTAAGTATAATTGCGACCTCACAGCTAAAGATCATTTCAATAATGTTGAATTT
GTGGATATGAAGAGAAAGTGTATTTTGGAAACAGAAGATCAAATTAAGAAAGAGATTACA
GCATCACTTAAATATTTGAGTTTAGCAGCATACTTTAGCCGTGATGATGTTAATCGTCCT
GGATATGCAAAATTCTTCTTTGATGCTGCAAGCGAAGAACGTGAACATGCTAAGAAACTT
ATTGAATACTTGCAAATGCGTGGCCGCTATTTCGATTTAGAAGACTCTGCCATTAGCAAC
ATTAATATTGGATCATTAGTAAAGGGATCAGAAAAGGCTGAACTCCTTAGCTTAGGCAGT
GAATGGATGAAAGCACCAGAAGCATCAAAGAACAAGGAAGTCTCAGCTGGTCTTAATGCA
CTCAGAACAGCTTTGAAAATGGAAGCCGTTGTCACTGGTAGCATTCGTAATTTAATTGCA
ACGTGCGAGGCTGAACAAGTCGAGGGCAAGAAGAATGAAATTTTCAACGATTATCACTTT
GCTGACTATCTTACTGGAGATTTCCTCTCAGAACAATATCAAGGAAAGAGAGACATTGCT
GGCAAGATTTCAACTCTCGGCAAAATGATCAGAGACAATGGTGCTGAGCTTGCAGATTAC
TTATTTGACAAATCATTGCAGTAA
>g2690.t20 Gene=g2690 Length=247
MNKFGILVAFAVCCFVSVSADTCKYNCDLTAKDHFNNVEFVDMKRKCILETEDQIKKEIT
ASLKYLSLAAYFSRDDVNRPGYAKFFFDAASEEREHAKKLIEYLQMRGRYFDLEDSAISN
INIGSLVKGSEKAELLSLGSEWMKAPEASKNKEVSAGLNALRTALKMEAVVTGSIRNLIA
TCEAEQVEGKKNEIFNDYHFADYLTGDFLSEQYQGKRDIAGKISTLGKMIRDNGAELADY
LFDKSLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g2690.t20 | CDD | cd01056 | Euk_Ferritin | 53 | 244 | 3.70834E-45 |
| 7 | g2690.t20 | Gene3D | G3DSA:1.20.1260.10 | - | 12 | 247 | 9.1E-56 |
| 2 | g2690.t20 | PANTHER | PTHR11431:SF43 | FERRITIN | 18 | 246 | 1.9E-61 |
| 3 | g2690.t20 | PANTHER | PTHR11431 | FERRITIN | 18 | 246 | 1.9E-61 |
| 1 | g2690.t20 | Pfam | PF00210 | Ferritin-like domain | 53 | 226 | 1.0E-22 |
| 9 | g2690.t20 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 10 | g2690.t20 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 11 | g2690.t20 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 12 | g2690.t20 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 8 | g2690.t20 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 247 | - |
| 15 | g2690.t20 | ProSiteProfiles | PS50905 | Ferritin-like diiron domain profile. | 41 | 230 | 28.82 |
| 4 | g2690.t20 | SUPERFAMILY | SSF47240 | Ferritin-like | 40 | 247 | 3.46E-42 |
| 6 | g2690.t20 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 14 | g2690.t20 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 5 | g2690.t20 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006879 | cellular iron ion homeostasis | BP |
| GO:0006826 | iron ion transport | BP |
| GO:0008199 | ferric iron binding | MF |
KEGG
Orthology
- This transcript has been annotated with K00522 (ferritin heavy chain)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed