General information for g2690.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ferritin subunit.
Parent gene
- The parent gene g2690 is located on chr_3: 19723742..19725128 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2690 | g2690.t23 | TTS | g2690.t23 | 19723354 | 19723354 |
| chr_3 | g2690 | g2690.t23 | isoform | g2690.t23 | 19723426 | 19724509 |
| chr_3 | g2690 | g2690.t23 | exon | g2690.t23.exon1 | 19723426 | 19723572 |
| chr_3 | g2690 | g2690.t23 | cds | g2690.t23.CDS1 | 19723426 | 19723572 |
| chr_3 | g2690 | g2690.t23 | exon | g2690.t23.exon2 | 19723635 | 19724152 |
| chr_3 | g2690 | g2690.t23 | cds | g2690.t23.CDS2 | 19723635 | 19724105 |
| chr_3 | g2690 | g2690.t23 | exon | g2690.t23.exon3 | 19724465 | 19724509 |
| chr_3 | g2690 | g2690.t23 | TSS | g2690.t23 | 19724736 | 19724736 |
Sequences
>g2690.t23 Gene=g2690 Length=710
ATGAACAAGTTTGGAATTTTAGTGGCCTTTGCAGTTTGCTGTTTTGCGACCTCACAGCTA
AAGATCATTTCAATAATGTTGAATTTGTGGATATGAAGAGAAAGTGTATTTTGGAAACAG
AAGATCAAATTAAGAAAGAGATTACAGCATCACTTAAATATTTGAGTTTAGCAGCATACT
TTAGCCGTGATGATGTTAATCGTCCTGGATATGCAAAATTCTTCTTTGATGCTGCAAGCG
AAGAACGTGAACATGCTAAGAAACTTATTGAATACTTGCAAATGCGTGGCCGCTATTTCG
ATTTAGAAGACTCTGCCATTAGCAACATTAATATTGGATCATTAGTAAAGGGATCAGAAA
AGGCTGAACTCCTTAGCTTAGGCAGTGAATGGATGAAAGCACCAGAAGCATCAAAGAACA
AGGAAGTCTCAGCTGGTCTTAATGCACTCAGAACAGCTTTGAAAATGGAAGCCGTTGTCA
CTGGTAGCATTCGTAATTTAATTGCAACGTGCGAGGCTGAACAAGTCGAGGGCAAGAAGA
ATGAAATTTTCAACGATTATCACTTTGCTGACTATCTTACTGGAGATTTCCTCTCAGAAC
AATATCAAGGAAAGAGAGACATTGCTGGCAAGATTTCAACTCTCGGCAAAATGATCAGAG
ACAATGGTGCTGAGCTTGCAGATTACTTATTTGACAAATCATTGCAGTAA
>g2690.t23 Gene=g2690 Length=205
MKRKCILETEDQIKKEITASLKYLSLAAYFSRDDVNRPGYAKFFFDAASEEREHAKKLIE
YLQMRGRYFDLEDSAISNINIGSLVKGSEKAELLSLGSEWMKAPEASKNKEVSAGLNALR
TALKMEAVVTGSIRNLIATCEAEQVEGKKNEIFNDYHFADYLTGDFLSEQYQGKRDIAGK
ISTLGKMIRDNGAELADYLFDKSLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2690.t23 | CDD | cd01056 | Euk_Ferritin | 11 | 202 | 0.000 |
| 5 | g2690.t23 | Gene3D | G3DSA:1.20.1260.10 | - | 1 | 205 | 0.000 |
| 2 | g2690.t23 | PANTHER | PTHR11431:SF43 | FERRITIN | 1 | 204 | 0.000 |
| 3 | g2690.t23 | PANTHER | PTHR11431 | FERRITIN | 1 | 204 | 0.000 |
| 1 | g2690.t23 | Pfam | PF00210 | Ferritin-like domain | 11 | 184 | 0.000 |
| 6 | g2690.t23 | ProSiteProfiles | PS50905 | Ferritin-like diiron domain profile. | 1 | 188 | 29.161 |
| 4 | g2690.t23 | SUPERFAMILY | SSF47240 | Ferritin-like | 10 | 205 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006879 | cellular iron ion homeostasis | BP |
| GO:0006826 | iron ion transport | BP |
| GO:0008199 | ferric iron binding | MF |
KEGG
Orthology
- This transcript has been annotated with K00522 (ferritin heavy chain)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
